RNA–Protein interactions for RNA: ENST00000554819.5

SCFD1-214, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 608 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-214ENST00000554819 TP73-AS1Q9UF72 201 aa0.37□□□□□ -2.35
SCFD1-214ENST00000554819 ZFC3H1O60293 1989 aaKnown RBP0.37□□□□□ -2.35
SCFD1-214ENST00000554819 APCP25054 2843 aa0.37□□□□□ -2.35
SCFD1-214ENST00000554819 FRAS1Q86XX4 4008 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 TRAV12-1A0A0B4J245 112 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 LINC00854A0A1B0GVQ3 168 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 PQLC2LA1A4F0 135 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 EEF1E1-BLOC1S5C9J1V9 151 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 NCR3O14931 201 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 TCL1AP56279 114 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 CNBPP62633 177 aaKnown RBP0.36□□□□□ -2.35
SCFD1-214ENST00000554819 MPV17LQ2QL34 196 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 RNASE10Q5GAN6 216 aaKnown RBP0.36□□□□□ -2.35
SCFD1-214ENST00000554819 SOSTDC1Q6X4U4 206 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 HIST3H2BBQ8N257 126 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 TOMM6Q96B49 74 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 ERGIC3Q9Y282 383 aa0.36□□□□□ -2.35
SCFD1-214ENST00000554819 TEP1Q99973 2627 aaKnown RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 RYR1P21817 5038 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 MTUS2Q5JR59 1369 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 DSTQ03001 7570 aaKnown RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 PTPN13Q12923 2485 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 E9PCH4 1651 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 DPRXA6NFQ7 191 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 PSMD12O00232 456 aaPredicted RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 LYZL6O75951 148 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 HLA-DRB1P01911 266 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 MGST1P10620 155 aaKnown RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 SRSF6Q13247 344 aaKnown RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 C1orf137Q5JT78 98 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 HIST2H3PS2Q5TEC6 136 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 ALKAL1Q6UXT8 129 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 C20orf196Q8IYI0 205 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 H1FXQ92522 213 aaKnown RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 SLC35B4Q969S0 331 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 OR52E6Q96RD3 313 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 NIPSNAP1Q9BPW8 284 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 CDC42SE1Q9NRR8 79 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 NHP2Q9NX24 153 aaKnown RBP0.35□□□□□ -2.35
SCFD1-214ENST00000554819 NKIRAS1Q9NYS0 192 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 HS3ST2Q9Y278 367 aa0.35□□□□□ -2.35
SCFD1-214ENST00000554819 TRAV9-1A0A075B6T8 112 aa0.34□□□□□ -2.36
SCFD1-214ENST00000554819 HIST3H3Q16695 136 aa0.34□□□□□ -2.36
SCFD1-214ENST00000554819 OR10J5Q8NHC4 309 aa0.34□□□□□ -2.36
SCFD1-214ENST00000554819 MED12Q93074 2177 aa0.34□□□□□ -2.36
SCFD1-214ENST00000554819 CMTM6Q9NX76 183 aa0.34□□□□□ -2.36
SCFD1-214ENST00000554819 KMT2CQ8NEZ4 4911 aaKnown RBP0.34□□□□□ -2.36
SCFD1-214ENST00000554819 NCOR1O75376 2440 aa0.34□□□□□ -2.36
SCFD1-214ENST00000554819 RYR2Q92736 4967 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 CEP192Q8TEP8 1941 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 ZNF736B4DX44 427 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-214ENST00000554819 CD79AP11912 226 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 ZNF25P17030 456 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-214ENST00000554819 PSME3P61289 254 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 SNRPD2P62316 118 aaKnown RBP0.33□□□□□ -2.36
SCFD1-214ENST00000554819 PATE1Q8WXA2 126 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 ITFG2Q969R8 447 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 GPR146Q96CH1 333 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 C11orf68Q9H3H3 251 aaKnown RBP0.33□□□□□ -2.36
SCFD1-214ENST00000554819 SLC35A3Q9Y2D2 325 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 TMEM56-RWDD3S4R434 201 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 CNTRLQ7Z7A1 2325 aa0.33□□□□□ -2.36
SCFD1-214ENST00000554819 MAP3K5Q99683 1374 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 JMJD1CQ15652 2540 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 MCM3APO60318 1980 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 EXOC1LA0A1B0GW35 172 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 CCDC160A6NGH7 325 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 CALB1P05937 261 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 TPM3P06753 285 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 CDC42P60953 191 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 TEX261Q6UWH6 196 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 TRAPPC6BQ86SZ2 158 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 C3orf56Q8N813 242 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 MRPS26Q9BYN8 205 aaKnown RBP0.32□□□□□ -2.36
SCFD1-214ENST00000554819 C10orf95Q9H7T3 257 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 ATP6V1DQ9Y5K8 247 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 U3KQ87 197 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 VWFP04275 2813 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 NUP155O75694 1391 aa0.32□□□□□ -2.36
SCFD1-214ENST00000554819 SCN3AQ9NY46 2000 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 EPPK1P58107 5090 aaKnown RBP0.31□□□□□ -2.36
SCFD1-214ENST00000554819 ABCA13Q86UQ4 5058 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 HERC1Q15751 4861 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 ANKHD1Q8IWZ3 2542 aaKnown RBP0.31□□□□□ -2.36
SCFD1-214ENST00000554819 PIEZO1Q92508 2521 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 BUB1B-PAK6H3BSN5 160 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 HIST1H1TP22492 207 aaPredicted RBP0.31□□□□□ -2.36
SCFD1-214ENST00000554819 SPCS3P61009 180 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 ANKRD29Q8N6D5 301 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 PTH2Q96A98 100 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 TRANK1O15050 2925 aa0.31□□□□□ -2.36
SCFD1-214ENST00000554819 BPTFQ12830 3046 aa0.3□□□□□ -2.36
SCFD1-214ENST00000554819 COL1A1P02452 1464 aaPredicted RBP0.3□□□□□ -2.36
SCFD1-214ENST00000554819 MAST4O15021 2626 aa0.3□□□□□ -2.36
SCFD1-214ENST00000554819 RYR3Q15413 4870 aa0.3□□□□□ -2.36
SCFD1-214ENST00000554819 ECM29Q5VYK3 1845 aa0.3□□□□□ -2.36
SCFD1-214ENST00000554819 TNNC2P02585 160 aa0.3□□□□□ -2.36
SCFD1-214ENST00000554819 S100A4P26447 101 aaKnown RBP0.3□□□□□ -2.36
SCFD1-214ENST00000554819 MAGOHP61326 146 aaKnown RBP0.3□□□□□ -2.36
SCFD1-214ENST00000554819 TPM4P67936 248 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms