RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 DFFBO76075 338 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 CST7O76096 145 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 APELAP0DMC3 54 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 RHOGP84095 191 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 SLC38A11Q08AI6 406 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 GAMTQ14353 236 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 MLANAQ16655 118 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 TCTEX1D4Q5JR98 221 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF329Q86UD4 541 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 LURAP1LQ8IV03 231 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 C9orf62Q8N4C0 152 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 OR5AU1Q8NGC0 362 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 OR1S2Q8NGQ3 325 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 OR5C1Q8NGR4 320 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF502Q8TBZ5 544 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 TMEM147Q9BVK8 224 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 ARV1Q9H2C2 271 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 KLK15Q9H2R5 256 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 CYTL1Q9NRR1 136 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 FBXL7Q9UJT9 491 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 WDR83OSQ9Y284 106 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.42□□□□□ -1.22
LIMA1-211ENST00000552338 I3L521 148 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 OR2J3O76001 311 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 JTBO76095 146 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 PRH1P02810 166 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 TRGV3P03979 118 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 OPRK1P41145 380 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 NPBWR1P48145 328 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 EIF2B2P49770 351 aaKnown RBP7.42□□□□□ -1.22
LIMA1-211ENST00000552338 AP2S1P53680 142 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-211ENST00000552338 MFAP4P55083 255 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 ATP5G2Q06055 141 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF266Q14584 549 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 C15orf32Q32M92 178 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 KRTAP24-1Q3LI83 254 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 C10orf99Q6UWK7 81 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 TREML4Q6UXN2 200 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 C19orf35Q6ZS72 473 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 SLC16A13Q7RTY0 426 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-211ENST00000552338 UBAC2Q8NBM4 344 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 OR4X2Q8NGF9 303 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 EEF1AKMT3Q96AZ1 226 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 BSCL2Q96G97 398 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-211ENST00000552338 TRGV9Q99603 122 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 ATP5SQ99766 215 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 C21orf62Q9NYP8 219 aa7.42□□□□□ -1.22
LIMA1-211ENST00000552338 IGKV1D-37A0A075B6S9 117 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 IGKV1OR2-108A0A075B7D4 117 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 IGLC1P0CG04 106 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 PF4V1P10720 104 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 C4BPBP20851 252 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 TPPP2P59282 170 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 YPEL3P61236 119 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-211ENST00000552338 OR8G2PQ6IF36 304 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 SPSB3Q6PJ21 355 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 TEPPQ6URK8 271 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 TMUB2Q71RG4 321 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 STOML3Q8TAV4 291 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 TAF15Q92804 592 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMA1-211ENST00000552338 MISP3Q96FF7 219 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF414Q96IQ9 312 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 SLC35E1Q96K37 410 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 CCDC140Q96MF4 163 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 CITED1Q99966 193 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 ARPC5LQ9BPX5 153 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 WDR61Q9GZS3 305 aaKnown RBP7.41□□□□□ -1.22
LIMA1-211ENST00000552338 WFDC1Q9HC57 220 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 UQCC1Q9NVA1 299 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 MRPL36Q9P0J6 103 aaKnown RBP7.41□□□□□ -1.22
LIMA1-211ENST00000552338 FBXL17Q9UF56 701 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 NF1P21359 2839 aa7.41□□□□□ -1.22
LIMA1-211ENST00000552338 MFSD2BA6NFX1 497 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 BCL2L11O43521 198 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 CFDP00746 253 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-211ENST00000552338 IGKV1-17P01599 117 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 RPLP1P05386 114 aaKnown RBP7.4□□□□□ -1.22
LIMA1-211ENST00000552338 CTSGP08311 255 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 LGALS1P09382 135 aaKnown RBP7.4□□□□□ -1.22
LIMA1-211ENST00000552338 PLP1P60201 277 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 AWAT1Q58HT5 328 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 TMEM217Q8N7C4 229 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 C4orf3Q8WVX3 66 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 TMEM158Q8WZ71 300 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 NPIPB3Q92617 1050 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 MS4A10Q96PG2 267 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 ARL6Q9H0F7 186 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF355PQ9NSJ1 428 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 TIMM9Q9Y5J7 89 aa7.4□□□□□ -1.22
LIMA1-211ENST00000552338 TSSC4Q9Y5U2 329 aaPredicted RBP7.4□□□□□ -1.22
LIMA1-211ENST00000552338 JMJD1CQ15652 2540 aa7.4□□□□□ -1.23
LIMA1-211ENST00000552338 KANTRA0A1W2PQU2 76 aa7.39□□□□□ -1.23
LIMA1-211ENST00000552338 TCRBV4S1A1TA0A5B7 111 aa7.39□□□□□ -1.23
LIMA1-211ENST00000552338 ADARB2-AS1A8MUL3 147 aa7.39□□□□□ -1.23
LIMA1-211ENST00000552338 HNRNPCP07910 306 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMA1-211ENST00000552338 ADMP35318 185 aa7.39□□□□□ -1.23
LIMA1-211ENST00000552338 RPL29P47914 159 aaKnown RBP7.39□□□□□ -1.23
LIMA1-211ENST00000552338 RND2P52198 227 aa7.39□□□□□ -1.23
LIMA1-211ENST00000552338 KRTAP10-3P60369 221 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms