RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ARHGAP32A7KAX9 2087 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 IQGAP3Q86VI3 1631 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 KNDC1Q76NI1 1749 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 KIAA1551Q9HCM1 1747 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 PIK3C2GO75747 1445 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 CFAP47Q6ZTR5 3102 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 TRGV5A0A0B4J1U4 118 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 NOS1APO75052 506 aaPredicted RBP2.97□□□□□ -1.93
LIMA1-210ENST00000552045 BPGMP07738 259 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 RPS20P60866 119 aaKnown RBP2.97□□□□□ -1.93
LIMA1-210ENST00000552045 LHFPL1Q86WI0 220 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 SLC35F6Q8N357 371 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 MRPL30Q8TCC3 161 aaKnown RBP2.97□□□□□ -1.93
LIMA1-210ENST00000552045 TSPAN32Q96QS1 320 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 EFCAB1Q9HAE3 211 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 IDI2-AS1Q9NZ38 188 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 FUT9Q9Y231 359 aa2.97□□□□□ -1.93
LIMA1-210ENST00000552045 RBM7Q9Y580 266 aaKnown RBP2.97□□□□□ -1.93
LIMA1-210ENST00000552045 FLNBO75369 2602 aaKnown RBP2.97□□□□□ -1.93
LIMA1-210ENST00000552045 C5orf42Q9H799 3197 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 KIAA0100Q14667 2235 aaKnown RBP2.96□□□□□ -1.94
LIMA1-210ENST00000552045 ZNF609O15014 1411 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 USP54Q70EL1 1684 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 CFAP54Q96N23 3096 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 TRAV26-2A0A0B4J265 109 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 MUC21A0A0G2JKD1 596 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 MUC21A0A140T8X8 626 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 C2orf74A8MZ97 194 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 C3orf84H3BNL1 204 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 LEPROTO15243 131 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 CBR1P16152 277 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 S100A5P33763 92 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 FUSP35637 526 aaKnown RBP eCLIP2.96□□□□□ -1.94
LIMA1-210ENST00000552045 IAH1Q2TAA2 248 aaPredicted RBP2.96□□□□□ -1.94
LIMA1-210ENST00000552045 ZNF767PQ75MW2 155 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 S100A7AQ86SG5 101 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 OR4X1Q8NH49 305 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 SIGMAR1Q99720 223 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 COMMD5Q9GZQ3 224 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 FASNP49327 2511 aaKnown RBP2.96□□□□□ -1.94
LIMA1-210ENST00000552045 NUP155O75694 1391 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 SBF1O95248 1867 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 SCN9AQ15858 1988 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 KIF13BQ9NQT8 1826 aa2.96□□□□□ -1.94
LIMA1-210ENST00000552045 CEP162Q5TB80 1403 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 SMG6Q86US8 1419 aaKnown RBP2.95□□□□□ -1.94
LIMA1-210ENST00000552045 SERPINA7P05543 415 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 CST2P09228 141 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 CCL5P13501 91 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 ALDH3A1P30838 453 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 DEFA1P59665 94 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 AGTRAPQ6RW13 159 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 Q6ZS52 159 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 BTF3L4Q96K17 158 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 TMEM147Q9BVK8 224 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 FBXL12Q9NXK8 326 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 ANKRD30AQ9BXX3 1397 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 QRICH2Q9H0J4 1663 aa2.95□□□□□ -1.94
LIMA1-210ENST00000552045 KMT2BQ9UMN6 2715 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-210ENST00000552045 C4AP0C0L4 1744 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 CRYBG1Q9Y4K1 1723 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 HTTP42858 3142 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 PTPRSQ13332 1948 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 A0A0J9YW62 118 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 TFPTP0C1Z6 253 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 CCR2P41597 374 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 LIN52Q52LA3 116 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 ZNF676Q8N7Q3 588 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 C14orf105Q9NVL8 296 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 IL36BQ9NZH7 164 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 TMEM56-RWDD3S4R434 201 aa2.94□□□□□ -1.94
LIMA1-210ENST00000552045 RBBP6Q7Z6E9 1792 aaKnown RBP2.94□□□□□ -1.94
LIMA1-210ENST00000552045 C4BP0C0L5 1744 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 MAST2Q6P0Q8 1798 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 hADV38S2A0JD32 116 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 ZNF878C9JN71 531 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 PDE6DO43924 150 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 OR7C1O76099 320 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-210ENST00000552045 CRYZL1O95825 349 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 CCL20P78556 96 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 SS18Q15532 418 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 TAF1AQ15573 450 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-210ENST00000552045 TMEM42Q69YG0 159 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 SLC35E3Q7Z769 313 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 OR51A2Q8NGJ7 313 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 OR51T1Q8NGJ9 327 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 OR10X1Q8NGY0 326 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 OR5J2Q8NH18 312 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 ACOT12Q8WYK0 555 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 IMMP2LQ96T52 175 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 KLF6Q99612 283 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-210ENST00000552045 NIPSNAP1Q9BPW8 284 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 Q9BRP9 147 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 KIFC1Q9BW19 673 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 NMNAT1Q9HAN9 279 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-210ENST00000552045 ARL5AQ9Y689 179 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 CHD6Q8TD26 2715 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 CPSF1Q10570 1443 aaKnown RBP2.93□□□□□ -1.94
LIMA1-210ENST00000552045 MYOM3Q5VTT5 1437 aa2.93□□□□□ -1.94
LIMA1-210ENST00000552045 C5P01031 1676 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms