RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SPSB3Q6PJ21 355 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 HEPN1Q6WQI6 88 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 PLEKHB2Q96CS7 222 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 LRRC75A-AS1Q8N1F1 130 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 SCGB3A1Q96QR1 104 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 RPRMQ9NS64 109 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 TRBV20OR9-2A0A075B6H5 130 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 TNFSF13O75888 250 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 AMBPP02760 352 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 ID3Q02535 119 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 CD300CQ08708 224 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 LHFPL1Q86WI0 220 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 OR2K2Q8NGT1 345 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 ZNF502Q8TBZ5 544 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 NBR2O15453 112 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 WNT2P09544 360 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 NBEAP1P0C6P0 100 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 GATA4P43694 442 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 SPSB2Q99619 263 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 EPDR1Q9UM22 224 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 TRBV7-1A0A0A6YYK4 115 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 FLVCR1-AS1Q8TAF5 88 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 COL4A6Q14031 1691 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 SCN1AP35498 2009 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 TSPAN13O95857 204 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 APOHP02749 345 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-211ENST00000543710 APOC4P55056 127 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 RNF126Q9BV68 326 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 MUC6Q6W4X9 2439 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 FABP5P3A8MUU1 101 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 C12orf77C9JDV5 145 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 IGKCP01834 107 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 EAF1Q96JC9 268 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-211ENST00000543710 IMMP1LQ96LU5 166 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 MRPL16Q9NX20 251 aaKnown RBP6.51□□□□□ -1.37
VPS13D-211ENST00000543710 IGHV3OR16-12A0A075B7B8 117 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 CRXO43186 299 aaPredicted RBP6.51□□□□□ -1.37
VPS13D-211ENST00000543710 ZNF56Q15929 161 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 C21orf62Q9NYP8 219 aa6.51□□□□□ -1.37
VPS13D-211ENST00000543710 REG1AP05451 166 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 PEAR1Q5VY43 1037 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-211ENST00000543710 RIF1Q5UIP0 2472 aaKnown RBP6.5□□□□□ -1.37
VPS13D-211ENST00000543710 TRAV8-4A0A0B4J246 113 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 ZNF688P0C7X2 276 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 LHX2P50458 406 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 OR10W1Q8NGF6 305 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 ORAOV1Q8WV07 137 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 C11orf68Q9H3H3 251 aaKnown RBP6.5□□□□□ -1.37
VPS13D-211ENST00000543710 PRDM13Q9H4Q3 707 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 LINC01545Q5VT33 79 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM75Q8N9X5 138 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 C1QTNF4Q9BXJ3 329 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 NUMA1Q14980 2115 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 AHCTF1Q8WYP5 2266 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM238C9JI98 176 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 H3BQ85 93 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 ADMP35318 185 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 LHFPL4Q7Z7J7 247 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 PTPRFP10586 1907 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 TRAV40A0A0B4J280 105 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 A0A1B0GV90 55 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 HOXA3O43365 443 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-211ENST00000543710 ZIC3O60481 467 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 NTN1O95631 604 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 MEIG1Q5JSS6 88 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 STHQ8IWL8 128 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 MSL2Q9HCI7 577 aa6.5□□□□□ -1.37
VPS13D-211ENST00000543710 CHTOPQ9Y3Y2 248 aaKnown RBP6.5□□□□□ -1.37
VPS13D-211ENST00000543710 TANC1Q9C0D5 1861 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 ZNF638Q14966 1978 aaKnown RBP6.49□□□□□ -1.37
VPS13D-211ENST00000543710 CEACAM8P31997 349 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-211ENST00000543710 MORN2Q502X0 79 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 LCN12Q6JVE5 192 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 TEX38Q6PEX7 206 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 GOLT1AQ6ZVE7 132 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 RMI2Q96E14 147 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 WDR83OSQ9Y284 106 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 ABCA4P78363 2273 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 SCO2A0A1W2PP80 73 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 CEACAM4O75871 244 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 NDUFB8O95169 186 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 TFF3Q07654 80 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 PDE6HQ13956 83 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 TRGV3P03979 118 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 CNTFRP26992 372 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 IFI27P40305 119 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-211ENST00000543710 LAGE3Q14657 143 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 LY6G6FQ5SQ64 297 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM42Q69YG0 159 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 TMEM133Q9H2Q1 129 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 SCN10AQ9Y5Y9 1956 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 LOC107984156A0A0G2JMH3 177 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 TOMM40O96008 361 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 HTN1P15515 57 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 GAS1P54826 345 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 SUPT4H1P63272 117 aaKnown RBP6.49□□□□□ -1.37
VPS13D-211ENST00000543710 C1orf194Q5T5A4 169 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 CFAP161Q6P656 301 aa6.49□□□□□ -1.37
VPS13D-211ENST00000543710 MORN3Q6PF18 240 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-211ENST00000543710 ARL17AQ8IVW1 177 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms