RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	FAM169B	Q8N8A8	192 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	NUDT10	Q8NFP7	164 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	WIPF2	Q8TF74	440 aa	Predicted RBP	10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	SNRNP40	Q96DI7	357 aa	Known RBP	10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	NUDT11	Q96G61	164 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	GRAMD2B	Q96HH9	432 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	GAFA1	Q96PS6	74 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	PAXX	Q9BUH6	204 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	NCOR1	O75376	2440 aa		10.5	□□□□□ -0.73
DDX11-223	ENST00000542838	DLL1	O00548	723 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	COX7A2P2	O60397	106 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	ERH	P84090	104 aa	Known RBP	10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	RASL11A	Q6T310	242 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	FAM216B	Q8N7L0	139 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	NUP35	Q8NFH5	326 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	MBD6	Q96DN6	1003 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	RPUSD1	Q9UJJ7	312 aa	Known RBP	10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	CBY1	Q9Y3M2	126 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	SVIL	O95425	2214 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	PEX7	O00628	323 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	NDUFB8	O95169	186 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	GLRX	P35754	106 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	GDF5OS	Q5U4N7	250 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	FAM231D	Q6ZW35	169 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	CACNG8	Q8WXS5	425 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	ZNF714	Q96N38	554 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	DKK4	Q9UBT3	224 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	DSP	P15924	2871 aa	Known RBP	10.49	□□□□□ -0.73
DDX11-223	ENST00000542838		M0R2Z0	102 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	GPR6	P46095	362 aa	Predicted RBP	10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	SRSF6	Q13247	344 aa	Known RBP	10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	PMCHL1	Q16048	86 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	ZNF329	Q86UD4	541 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	HARBI1	Q96MB7	349 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	MUC3A	Q02505	3323 aa		10.49	□□□□□ -0.73
DDX11-223	ENST00000542838	RPL8	P62917	257 aa	Known RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	TNFAIP6	P98066	277 aa	Predicted RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	C10orf113	Q5VZT2	155 aa		10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	SSBP4	Q9BWG4	385 aa	Predicted RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	NDUFA4L2	Q9NRX3	87 aa		10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	COL6A3	P12111	3177 aa		10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	HINT1	P49773	126 aa	Predicted RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838		Q56UQ5	140 aa		10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	RNASEK	Q6P5S7	137 aa	Known RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	OR1L4	Q8NGR5	311 aa		10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	MRPL20	Q9BYC9	149 aa	Known RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	SAP30L	Q9HAJ7	183 aa		10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	TNRC18	O15417	2968 aa	Predicted RBP	10.48	□□□□□ -0.73
DDX11-223	ENST00000542838	TRAV17	A0A0B4J275	112 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	APOA2	P02652	100 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	TSPO	P30536	169 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	GATA4	P43694	442 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	CAMP	P49913	170 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	OSR1	Q8TAX0	266 aa	Predicted RBP	10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	FAM181B	A6NEQ2	426 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838		E7EUB6	86 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	TM4SF5	O14894	197 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	IGHV3-48	P01763	117 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	EBLN2	Q6P2I7	272 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	PATE2	Q6UY27	113 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	ZNF788	Q6ZQV5	615 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	NPIPB3	Q92617	1050 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	TNFRSF19	Q9NS68	423 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	IGLV3-9	A0A075B6K5	115 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	CORT	O00230	105 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	BPIFB3	P59826	476 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	GNG5	P63218	68 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	KLF5	Q13887	457 aa	Predicted RBP	10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	ALKBH7	Q9BT30	221 aa	Predicted RBP	10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	CHRDL1	Q9BU40	450 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	ZNF430	Q9H8G1	570 aa	Predicted RBP	10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	LINC00574	Q9H8X3	128 aa		10.47	□□□□□ -0.73
DDX11-223	ENST00000542838	ARFGEF3	Q5TH69	2177 aa		10.46	□□□□□ -0.73
DDX11-223	ENST00000542838	C20orf202	A1L168	122 aa		10.46	□□□□□ -0.73
DDX11-223	ENST00000542838	HIGD1C	A8MV81	97 aa		10.46	□□□□□ -0.73
DDX11-223	ENST00000542838	SEM1	Q6ZVN7	128 aa		10.46	□□□□□ -0.73
DDX11-223	ENST00000542838	FNDC4	Q9H6D8	234 aa	Predicted RBP	10.46	□□□□□ -0.73
DDX11-223	ENST00000542838	TRAV9-2	A0A087WT02	112 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	hADV38S2	A0JD32	116 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	PLAU	P00749	431 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	IGHV1-46	P01743	117 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	HIST1H1E	P10412	219 aa	Known RBP	10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	REG1B	P48304	166 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	UBE2G1	P62253	170 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	TMEM30B	Q3MIR4	351 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	TIMM23B	Q5SRD1	257 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838	ZNF833P	Q6ZTB9	187 aa		10.46	□□□□□ -0.74
DDX11-223	ENST00000542838		A0A1W2PN81	502 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	TCRBV4S1A1T	A0A5B7	111 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	SP9	P0CG40	484 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	PLA2G2C	Q5R387	149 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	PRR31	Q5SQ13	230 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	RBMXL3	Q8N7X1	1067 aa	Known RBP	10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	OR8B3	Q8NGG8	313 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	SGK494	Q96LW2	274 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	OR8B2	Q96RD0	313 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	MRPS16	Q9Y3D3	137 aa	Known RBP	10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	DYSF	O75923	2080 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838		H0YJW9	148 aa		10.45	□□□□□ -0.74
DDX11-223	ENST00000542838	ZNF474	Q6S9Z5	364 aa	Predicted RBP	10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms