RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 H2BFWTQ7Z2G1 175 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 SPARTQ8N0X7 666 aa12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 FAM212BQ9NTI7 297 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 MRPL36Q9P0J6 103 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-214ENST00000542663 A0A1W2PS18 150 aa12.76□□□□□ -0.37
CLSTN3-214ENST00000542663 CD74P04233 296 aa12.76□□□□□ -0.37
CLSTN3-214ENST00000542663 P2RY1P47900 373 aa12.76□□□□□ -0.37
CLSTN3-214ENST00000542663 ERHP84090 104 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-214ENST00000542663 IZUMO4Q1ZYL8 232 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 TBC1D26Q86UD7 250 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 LYSMD2Q8IV50 215 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 OR5H2Q8NGV7 314 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 OR6F1Q8NGZ6 308 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 MRGPRFQ96AM1 343 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 RAB40CQ96S21 281 aa12.75□□□□□ -0.37
CLSTN3-214ENST00000542663 IGLV2-18A0A075B6J9 118 aa12.74□□□□□ -0.37
CLSTN3-214ENST00000542663 ATP6V1G2O95670 118 aa12.74□□□□□ -0.37
CLSTN3-214ENST00000542663 HSPA13P48723 471 aa12.74□□□□□ -0.37
CLSTN3-214ENST00000542663 TAS2R46P59540 309 aa12.74□□□□□ -0.37
CLSTN3-214ENST00000542663 METTL26Q96S19 204 aa12.74□□□□□ -0.37
CLSTN3-214ENST00000542663 FNDC4Q9H6D8 234 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-214ENST00000542663 HRH1P35367 487 aa12.73□□□□□ -0.37
CLSTN3-214ENST00000542663 MLANAQ16655 118 aa12.73□□□□□ -0.37
CLSTN3-214ENST00000542663 Q6ZRM9 215 aa12.73□□□□□ -0.37
CLSTN3-214ENST00000542663 FCGR1BQ92637 280 aa12.73□□□□□ -0.37
CLSTN3-214ENST00000542663 LOC100506127A0A0U1RQW1 187 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 INS-IGF2F8WCM5 200 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 CLN5O75503 358 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 IFNA10P01566 189 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 RNASE2P10153 161 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 DHRS2Q13268 280 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 PSMG4Q5JS54 123 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 XCL2Q9UBD3 114 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 U3KQE9 123 aa12.72□□□□□ -0.37
CLSTN3-214ENST00000542663 IGKV1-17P01599 117 aa12.71□□□□□ -0.37
CLSTN3-214ENST00000542663 NPY1RP25929 384 aa12.71□□□□□ -0.37
CLSTN3-214ENST00000542663 SNCAP37840 140 aa12.71□□□□□ -0.37
CLSTN3-214ENST00000542663 TAS2R20P59543 309 aa12.71□□□□□ -0.37
CLSTN3-214ENST00000542663 S100A16Q96FQ6 103 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-214ENST00000542663 LRP1BQ9NZR2 4599 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 A0A0B4J293 547 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 HELTA6NFD8 242 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 IGKV1-5P01602 117 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 P0C879 139 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 HLA-DMAP28067 261 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 TIGITQ495A1 244 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 KCTD21Q4G0X4 260 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 LPCAT3Q6P1A2 487 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 UBE2DNLQ8IWF7 75 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 SLC35G3Q8N808 338 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 OR4X1Q8NH49 305 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 GLMPQ8WWB7 406 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 TMEM230Q96A57 120 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 C1QTNF4Q9BXJ3 329 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 PLA2G2EQ9NZK7 142 aa12.7□□□□□ -0.38
CLSTN3-214ENST00000542663 CORTO00230 105 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 IFNA21P01568 189 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 IFNA17P01571 189 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 S100GP29377 79 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 UBE2NLQ5JXB2 153 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 TMEM69Q5SWH9 247 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 C16orf54Q6UWD8 224 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 ZNF705AQ6ZN79 300 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 RAB26Q9ULW5 256 aa12.69□□□□□ -0.38
CLSTN3-214ENST00000542663 ZNF705FA8MVS1 300 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 H3BMM0 161 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 TMEM127O75204 238 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 ZNF705DP0CH99 300 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 ZNF705BP0CI00 300 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 TGFBR1P36897 503 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 OPRK1P41145 380 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 UCP3P55916 312 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 NUTF2P61970 127 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 TSPAN5P62079 268 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 NARS2Q96I59 477 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 NEU1Q99519 415 aa12.68□□□□□ -0.38
CLSTN3-214ENST00000542663 FAM90A26D6RGX4 464 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 SPART-AS1P0CW21 52 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 PRSS3P35030 304 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 ETV6P41212 452 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 RPL5P46777 297 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 SUB1P53999 127 aaKnown RBP eCLIP12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 BSXQ3C1V8 233 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 SAMD12Q8N8I0 201 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 GPX8Q8TED1 209 aa12.67□□□□□ -0.38
CLSTN3-214ENST00000542663 APOBP04114 4563 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 EIF2B2P49770 351 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 EMP1P54849 157 aa12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 RNF212Q495C1 297 aa12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 SOHLH1Q5JUK2 328 aa12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 C1orf134Q5TEV5 83 aa12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 FAM210BQ96KR6 192 aa12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 TP53RKQ96S44 253 aa12.66□□□□□ -0.38
CLSTN3-214ENST00000542663 CDK2AP2O75956 126 aa12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 HNRNPCP07910 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 IGLC1P0CG04 106 aa12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 HLA-DRB4P13762 266 aa12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 HOXA1P49639 335 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 AP2S1P53680 142 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-214ENST00000542663 GDF5OSQ5U4N7 250 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms