RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MFAP4P55083 255 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 MLANAQ16655 118 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 TMEM14EPQ6UXP3 125 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 CLEC19AQ6UXS0 136 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 TXN2Q99757 166 aa13.21□□□□□ -0.29
LIG1-204ENST00000542460 GAR1Q9NY12 217 aaKnown RBP13.21□□□□□ -0.29
LIG1-204ENST00000542460 E5RGE8 158 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 LINC01619G3V211 115 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 H0YIZ8 118 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 BOLA2-SMG1P6H3BVE0 249 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 IGHV3-48P01763 117 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 SLC25A4P12235 298 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 GPX4P36969 197 aaPredicted RBP13.2□□□□□ -0.3
LIG1-204ENST00000542460 CAV2P51636 162 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 RAP2BP61225 183 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 CD69Q07108 199 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 ZNF616Q08AN1 781 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 ACSM6Q6P461 480 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 CACNG8Q8WXS5 425 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 DPF1Q92782 380 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 DUX3Q96PT4 197 aa13.2□□□□□ -0.3
LIG1-204ENST00000542460 LYRM2Q9NU23 88 aaPredicted RBP13.2□□□□□ -0.3
LIG1-204ENST00000542460 IGHV4OR15-8A0A075B7B6 117 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 A0A087WW49 117 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 TRBV12-3P01733 135 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 NPBWR1P48145 328 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 FHL3Q13643 280 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 Q56UQ5 140 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 PRSS54Q6PEW0 395 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 UBAC2Q8NBM4 344 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 RNF126Q9BV68 326 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 OR5AC2Q9NZP5 309 aa13.19□□□□□ -0.3
LIG1-204ENST00000542460 PRSS46E5RG02 174 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 F8W735 103 aaPredicted RBP13.18□□□□□ -0.3
LIG1-204ENST00000542460 PF4P02776 101 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 METTL15P1P0C7V9 234 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 GPR183P32249 361 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 ARL3P36405 182 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 P2RY1P47900 373 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 FGL1Q08830 312 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 OR4X1Q8NH49 305 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 CHAC2Q8WUX2 184 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 BSCL2Q96G97 398 aaPredicted RBP13.18□□□□□ -0.3
LIG1-204ENST00000542460 NEURL2Q9BR09 285 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 FAM24AA6NFZ4 105 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 OR2T8A6NH00 312 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 PMS2P5A8MQ11 134 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 PPP5D1E7EU14 171 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 TSPAN15O95858 294 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 ZP3P21754 424 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 OR8G2PQ6IF36 304 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 SPSB3Q6PJ21 355 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 SLC16A13Q7RTY0 426 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 TMEM116Q8NCL8 245 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 OR10P1Q8NGE3 313 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 THAP6Q8TBB0 222 aa13.18□□□□□ -0.3
LIG1-204ENST00000542460 BMPR1BO00238 502 aa13.17□□□□□ -0.3
LIG1-204ENST00000542460 TGOLN2O43493 480 aa13.17□□□□□ -0.3
LIG1-204ENST00000542460 GNG7O60262 68 aa13.17□□□□□ -0.3
LIG1-204ENST00000542460 GGCTO75223 188 aaKnown RBP13.17□□□□□ -0.3
LIG1-204ENST00000542460 SCAF4O95104 1147 aaKnown RBP13.17□□□□□ -0.3
LIG1-204ENST00000542460 CTSGP08311 255 aa13.17□□□□□ -0.3
LIG1-204ENST00000542460 TMEM252Q8N6L7 170 aa13.17□□□□□ -0.3
LIG1-204ENST00000542460 SLC35E1Q96K37 410 aa13.17□□□□□ -0.3
LIG1-204ENST00000542460 MRPL36Q9P0J6 103 aaKnown RBP13.17□□□□□ -0.3
LIG1-204ENST00000542460 NBEAL1Q6ZS30 2694 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 CLN5O75503 358 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 CCNKO75909 580 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 LYL1P12980 280 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 HOXD3P31249 432 aaPredicted RBP13.16□□□□□ -0.3
LIG1-204ENST00000542460 SULT1A1P50225 295 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 RND2P52198 227 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 GAMTQ14353 236 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 RPEL1Q2QD12 228 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 AKAP14Q86UN6 197 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 STX12Q86Y82 276 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 OR2T35Q8NGX2 323 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 DCUN1D4Q92564 292 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 ACY3Q96HD9 319 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 SLC25A31Q9H0C2 315 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 MBD2Q9UBB5 411 aa13.16□□□□□ -0.3
LIG1-204ENST00000542460 TRAV30A0A087WSZ9 112 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 TRAV14DV4A0A0A6YYC5 116 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 IGSF23A1L1A6 192 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 NUPL2O15504 423 aaKnown RBP13.15□□□□□ -0.3
LIG1-204ENST00000542460 SCGB2A1O75556 95 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 OR2C1O95371 312 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 NPIPB3Q92617 1050 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 CHRDL1Q9BU40 450 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 ZC4H2Q9NQZ6 224 aa13.15□□□□□ -0.3
LIG1-204ENST00000542460 CST7O76096 145 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 ADMP35318 185 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 SLURP1P55000 103 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 DLK1P80370 383 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 KLF5Q13887 457 aaPredicted RBP13.14□□□□□ -0.31
LIG1-204ENST00000542460 Q5BKY6 102 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 ACOT7LQ6ZUV0 252 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 LINC00482Q8N8I6 264 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 GGACTQ9BVM4 153 aa13.14□□□□□ -0.31
LIG1-204ENST00000542460 S100A11P31949 105 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms