RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 NBR2O15453 112 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 CXorf1O96002 111 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 GCHFRP30047 84 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 CACNG8Q8WXS5 425 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 SSX3Q99909 188 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 SDF2L1Q9HCN8 221 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 YTHDF2Q9Y5A9 579 aaKnown RBP11.57□□□□□ -0.56
CLIP1-216ENST00000541410 IGKV1D-37A0A075B6S9 117 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 ATP5IP56385 69 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-216ENST00000541410 PMS2P11Q13670 270 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 CYP2G1PQ6ZSU1 146 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 C15orf54Q8N8G6 183 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 RNASEH2CQ8TDP1 164 aaKnown RBP11.57□□□□□ -0.56
CLIP1-216ENST00000541410 TBX15Q96SF7 602 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 PGPEP1LA6NFU8 196 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 NDUFB4O95168 129 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 GPX4P36969 197 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-216ENST00000541410 KLF17Q5JT82 389 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-216ENST00000541410 S4R3C0 116 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 OR7C2O60412 319 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 FAM120AOSQ5T036 256 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 PERPQ96FX8 193 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 FUT9Q9Y231 359 aa11.56□□□□□ -0.56
CLIP1-216ENST00000541410 IGHV4-61A0A0C4DH41 118 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 MT-CO2P00403 227 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 ATP5J2P56134 94 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 ZNF843Q8N446 348 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 FAM168AQ92567 244 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 ZNF503Q96F45 646 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 SCO2A0A1W2PP80 73 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 TMEM250H0YL14 139 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 PDLIM4P50479 330 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 FXYD3Q14802 87 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 TMEM241Q24JQ0 296 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 RNF212Q495C1 297 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 C1orf122Q6ZSJ8 110 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 WNT10AQ9GZT5 417 aa11.55□□□□□ -0.56
CLIP1-216ENST00000541410 HNF1AP20823 631 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 MAS1LP35410 378 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 KIR3DL3Q8N743 410 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 F11RQ9Y624 299 aaKnown RBP11.54□□□□□ -0.56
CLIP1-216ENST00000541410 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLIP1-216ENST00000541410 FBN2P35556 2912 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 TGIF2-C20orf24A0A0A6YYL0 155 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 CXCL1P09341 107 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 OR5G3P0C626 314 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 SAA4P35542 130 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 RPL23P62829 140 aaKnown RBP11.54□□□□□ -0.56
CLIP1-216ENST00000541410 NECAP1Q8NC96 275 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 OR1P1Q8NH06 330 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 OR4X1Q8NH49 305 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 Q8WTZ3 238 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 TNFRSF19Q9NS68 423 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 NAT8Q9UHE5 227 aa11.54□□□□□ -0.56
CLIP1-216ENST00000541410 TCRBV4S1A1TA0A5B7 111 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 MT-ND4LP03901 98 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 ORM2P19652 201 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 RAB5AP20339 215 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 SRSF1Q07955 248 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLIP1-216ENST00000541410 HABP2Q14520 560 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-216ENST00000541410 CLEC12BQ2HXU8 276 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 PATE2Q6UY27 113 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 OR2T10Q8NGZ9 312 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 TUBA4BQ9H853 241 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 IGHV4-30-2A0A087WSY4 118 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 NDPQ00604 133 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 ELOBQ15370 118 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 C5orf64Q2M2E5 130 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 PIP4P2Q8N4L2 257 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 ZNF114Q8NC26 417 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 RNF5Q99942 180 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 DNAJC4Q9NNZ3 241 aa11.53□□□□□ -0.56
CLIP1-216ENST00000541410 PSMB11A5LHX3 300 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 SH2D7A6NKC9 451 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-216ENST00000541410 COX7A2P2O60397 106 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 PYYP10082 97 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 TMEM11P17152 192 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 TMEM249Q2WGJ8 235 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 MRPL41Q8IXM3 137 aaKnown RBP11.52□□□□□ -0.57
CLIP1-216ENST00000541410 OR1B1Q8NGR6 318 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 NANPQ8TBE9 248 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 AJUBAQ96IF1 538 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 YPEL4Q96NS1 127 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 SAV1Q9H4B6 383 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-216ENST00000541410 TECRQ9NZ01 308 aaKnown RBP11.52□□□□□ -0.57
CLIP1-216ENST00000541410 ANKRD17O75179 2603 aaKnown RBP11.52□□□□□ -0.57
CLIP1-216ENST00000541410 NDUFA3O95167 84 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 PNRC1Q12796 327 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-216ENST00000541410 CCDC144NLQ6NUI1 221 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 NPBQ8NG41 125 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 PIMREGQ9BSJ6 248 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 SLC25A2Q9BXI2 301 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 ZNF355PQ9NSJ1 428 aa11.52□□□□□ -0.57
CLIP1-216ENST00000541410 CSPG4Q6UVK1 2322 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 TRBV20OR9-2A0A075B6H5 130 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 A0A087WWC5 75 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 CRYGCP07315 174 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 CX3CL1P78423 397 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 SMUG1Q53HV7 270 aa11.51□□□□□ -0.57
CLIP1-216ENST00000541410 C10orf113Q5VZT2 155 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms