RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 FNDC10F2Z333 226 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 S100A10P60903 97 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 CD69Q07108 199 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 ACSM6Q6P461 480 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 CLEC19AQ6UXS0 136 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 GPHB5Q86YW7 130 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 OR10P1Q8NGE3 313 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 RCC1LQ96I51 464 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 SLC35E1Q96K37 410 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 GGACTQ9BVM4 153 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 ELOVL1Q9BW60 279 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 SLC25A31Q9H0C2 315 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 PEMTQ9UBM1 199 aa13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 PAIP2BQ9ULR5 123 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 RCL1Q9Y2P8 373 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 LSM5Q9Y4Y9 91 aaKnown RBP13.51□□□□□ -0.25
CLSTN3-210ENST00000540931 ANKRD34BA5PLL1 514 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 MFSD2BA6NFX1 497 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 TGOLN2O43493 480 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 CLN5O75503 358 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 DEDDO75618 318 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 INSL3P51460 131 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 H2BFSP57053 126 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 RAB32Q13637 225 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 TREML4Q6UXN2 200 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 C19orf35Q6ZS72 473 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 STX12Q86Y82 276 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 C1QL4Q86Z23 238 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 CCDC140Q96MF4 163 aa13.5□□□□□ -0.25
CLSTN3-210ENST00000540931 TRRAPQ9Y4A5 3859 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 IGHV4OR15-8A0A075B7B6 117 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 A0A087WW49 117 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 C15orf62A8K5M9 175 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 LGALS9O00182 355 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 GIPP09681 153 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 HOXD3P31249 432 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 BCAP31P51572 246 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 RAP2BP61225 183 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 HBG1P69891 147 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 HBG2P69892 147 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 TMEM14EPQ6UXP3 125 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 C18orf65Q6ZTR6 163 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 LINC00482Q8N8I6 264 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 PPP1R1CQ8WVI7 109 aa13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 LYRM2Q9NU23 88 aaPredicted RBP13.49□□□□□ -0.25
CLSTN3-210ENST00000540931 NDUFA4O00483 81 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 OVOL1O14753 267 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 TSPAN15O95858 294 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 GPR183P32249 361 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 P2RY1P47900 373 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 CAV2P51636 162 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 ELLP55199 621 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 KLF5Q13887 457 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 DEFB136Q30KP8 78 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 SLC16A13Q7RTY0 426 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 UBAC2Q8NBM4 344 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 OR1S2Q8NGQ3 325 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 THAP6Q8TBB0 222 aa13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 ZNF436Q9C0F3 470 aaPredicted RBP13.48□□□□□ -0.25
CLSTN3-210ENST00000540931 OR2T8A6NH00 312 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 BMPR1BO00238 502 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 SIX6O95475 246 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 CFDP00746 253 aaPredicted RBP13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 S100A7P31151 101 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 S100A11P31949 105 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 BAXQ07812 192 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 FCN2Q15485 313 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 ATP6V1FQ16864 119 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 UFC1Q9Y3C8 167 aa13.47□□□□□ -0.25
CLSTN3-210ENST00000540931 MPC2O95563 127 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 TMEM50AO95807 157 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 CTSGP08311 255 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 BMI1P35226 326 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 SULT1A1P50225 295 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 PAX9P55771 341 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 DLK1P80370 383 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 PRSS54Q6PEW0 395 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 REC114Q7Z4M0 266 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 TMEM170AQ8WVE7 144 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 MARC2Q969Z3 335 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 FNDC4Q9H6D8 234 aaPredicted RBP13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 SIGLEC8Q9NYZ4 499 aa13.46□□□□□ -0.25
CLSTN3-210ENST00000540931 H3BP45 60 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 NUP62P37198 522 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 YPEL3P61236 119 aaPredicted RBP13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 DEFA5Q01523 94 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 C9orf66Q5T8R8 295 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 ZNF600Q6ZNG1 722 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 OR4C12Q96R67 309 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 GINS3Q9BRX5 216 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 NPVFQ9HCQ7 196 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 PFDN2Q9UHV9 154 aa13.45□□□□□ -0.26
CLSTN3-210ENST00000540931 IGHV3-21A0A0B4J1V1 117 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 IGHV3-23P01764 117 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 CXCL3P19876 107 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 OR10J1P30954 320 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 RND2P52198 227 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 DEFA6Q01524 100 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 LRRC37A5PQ49AS3 106 aa13.44□□□□□ -0.26
CLSTN3-210ENST00000540931 OR8G2PQ6IF36 304 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms