RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 BEX4Q9NWD9 120 aaPredicted RBP9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 CARHSP1Q9Y2V2 147 aaKnown RBP9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 NAV2Q8IVL1 2488 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 BTBD17A6NE02 478 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 ZFP92A6NM28 416 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 LINC01548A6NM66 108 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 HBE1P02100 147 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 SRP19P09132 144 aaKnown RBP9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 CTRB1P17538 263 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 RPL29P47914 159 aaKnown RBP9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 CDC34P49427 236 aaPredicted RBP9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 RND2P52198 227 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 SUB1P53999 127 aaKnown RBP eCLIP9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 ZNF90Q03938 601 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 PEA15Q15121 130 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 CTRB2Q6GPI1 263 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 OR1P1Q8NH06 330 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 CACNG8Q8WXS5 425 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 WNT10AQ9GZT5 417 aa9.7□□□□□ -0.86
AP003559.1-201ENST00000540906 MDFIC2A0A1B0GVS7 189 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 MT-CO2P00403 227 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 MBP02144 154 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 FAM106CPP0CH98 169 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 NPBWR1P48145 328 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 ZNF562Q6V9R5 426 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 SLC35E1Q96K37 410 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 SEC11CQ9BY50 192 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 SEPSECSQ9HD40 501 aaKnown RBP9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 ZANQ9Y493 2812 aa9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 ZNF469Q96JG9 3925 aaPredicted RBP9.69□□□□□ -0.86
AP003559.1-201ENST00000540906 I3L2K1 104 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 CYP2G1PQ6ZSU1 146 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 LINC01356Q8N9X3 169 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 THAP8Q8NA92 274 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 ARPC1AQ92747 370 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 PBDC1Q9BVG4 233 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 NOTCH2Q04721 2471 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 TRAV20A0A0B4J274 112 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 PSMB11A5LHX3 300 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 CYB5BO43169 146 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 IGHV4-31P0DP07 118 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 BCL2P10415 239 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 BRS3P32247 399 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 LOXL1Q08397 574 aaPredicted RBP9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 MORN5Q5VZ52 161 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 MIR17HGQ75NE6 70 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 Q96MF0 132 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 S4R3C0 116 aa9.68□□□□□ -0.86
AP003559.1-201ENST00000540906 K7EIM0 57 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 AMY1AP04745 511 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 BCL6BQ8N143 479 aaPredicted RBP9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 LRRC75A-AS1Q8N1F1 130 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 CYB561D1Q8N8Q1 229 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 TMEM37Q8WXS4 190 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 FANCD2OSQ96PS1 177 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 MEGF9Q9H1U4 602 aa9.67□□□□□ -0.86
AP003559.1-201ENST00000540906 FAM74A7A6NL05 159 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 SOX15O60248 233 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 TGFAP01135 160 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 STAG3L2P0CL84 134 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 STAG3L3P0CL85 134 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 ARL14EPLP0DKL9 152 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 BTN1A1Q13410 526 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 RAB31Q13636 194 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 FAM74A3Q4VXF1 159 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 IQCF2Q8IXL9 164 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 MRPL41Q8IXM3 137 aaKnown RBP9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 C5orf56Q8N8D9 126 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 SRSF8Q9BRL6 282 aaKnown RBP9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 SLC35B3Q9H1N7 401 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 DOK5Q9P104 306 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 PRRC2AP48634 2157 aaKnown RBP9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 TCRBV4S1A1TA0A5B7 111 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 ATP6V0E1O15342 81 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 HLA-DRB1P01911 266 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 CEBPGP53567 150 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 CD81P60033 236 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 LY6EQ16553 131 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 TMEM249Q2WGJ8 235 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 KHDC3LQ587J8 217 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 PATE2Q6UY27 113 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 OR5T1Q8NG75 326 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 ZNF503Q96F45 646 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 SSX3Q99909 188 aa9.66□□□□□ -0.86
AP003559.1-201ENST00000540906 CSPG4Q6UVK1 2322 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 PDZD2O15018 2839 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 TRAV5A0A0B4J249 113 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 A0A1W2PPV4 95 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 DNASE2O00115 360 aaPredicted RBP9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 NUPL2O15504 423 aaKnown RBP9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 HSPB1P04792 205 aaKnown RBP9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 CIARTQ8N365 385 aaPredicted RBP9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 TTC9CQ8N5M4 171 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 TMEM116Q8NCL8 245 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 C22orf15Q8WYQ4 148 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 MBD6Q96DN6 1003 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 RASL11BQ9BPW5 248 aa9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 NKX6-2Q9C056 277 aaPredicted RBP9.65□□□□□ -0.86
AP003559.1-201ENST00000540906 KCNIP2Q9NS61 270 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms