RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	PVRIG	Q6DKI7	326 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	UXS1	Q8NBZ7	420 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	DUSP18	Q8NEJ0	188 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	SLC24A4	Q8NFF2	622 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	DTD1	Q8TEA8	209 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	TMEM190	Q8WZ59	177 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	C20orf24	Q9BUV8	137 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	ZNF436	Q9C0F3	470 aa	Predicted RBP	6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	C20orf85	Q9H1P6	137 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	RBKS	Q9H477	322 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	FNDC4	Q9H6D8	234 aa	Predicted RBP	6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	PALMD	Q9NP74	551 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	HSPB7	Q9UBY9	170 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	UFC1	Q9Y3C8	167 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	TMED3	Q9Y3Q3	217 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	SMAD5-AS1	Q9Y6J3	95 aa		6.99	□□□□□ -1.29
SNHG1-215	ENST00000540904	NDUFA4	O00483	81 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	ZNF207	O43670	478 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	PITX3	O75364	302 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	IFNA10	P01566	189 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	TCRB	P04435	133 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	NPY1R	P25929	384 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	FCGR2B	P31994	310 aa	Predicted RBP	6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	NPBWR1	P48145	328 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	ZNF846	Q147U1	533 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	GUCA2B	Q16661	112 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	C2orf83	Q53S99	150 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	GGNBP1	Q5YKI7	109 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	LYG2	Q86SG7	212 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	OR2K2	Q8NGT1	345 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	COQ8A	Q8NI60	647 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	MARC2	Q969Z3	335 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	WDR12	Q9GZL7	423 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	DAZ1	Q9NQZ3	744 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	NUDT15	Q9NV35	164 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	TECR	Q9NZ01	308 aa	Known RBP	6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	MLX	Q9UH92	298 aa		6.98	□□□□□ -1.29
SNHG1-215	ENST00000540904	TRAV6	A0A075B6T7	132 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	RPS10-NUDT3	A0A1W2PQS6	291 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	ADAP1	O75689	374 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	IAPP	P10997	89 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	SLC25A6	P12236	298 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	LOR	P23490	312 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	ELL	P55199	621 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	BTNL8	Q6UX41	500 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	GTSCR1	Q86UQ5	136 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	NOXA1	Q86UR1	476 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	OR52B4	Q8NGK2	314 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	RNASEH2C	Q8TDP1	164 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	TMEM170A	Q8WVE7	144 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	WDR89	Q96FK6	387 aa	Predicted RBP	6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	B9D2	Q9BPU9	175 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	MAGT1	Q9H0U3	335 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	MRPL36	Q9P0J6	103 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	MRPL27	Q9P0M9	148 aa	Known RBP	6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	TBC1D24	Q9ULP9	559 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904		U3KQ87	197 aa		6.97	□□□□□ -1.29
SNHG1-215	ENST00000540904	FAM240B	A0A1B0GVZ2	78 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	C15orf62	A8K5M9	175 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	MPTX1	A8MV57	137 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	CLN5	O75503	358 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	MED6	O75586	246 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	UPK1B	O75841	260 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	SCAF4	O95104	1147 aa	Known RBP	6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	TMEM50A	O95807	157 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	IFNA21	P01568	189 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	IFNA4	P05014	189 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	C8orf88	P0DMB2	117 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	MZT2B	Q6NZ67	158 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	TMEM61	Q8N0U2	210 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904		Q8N1Y9	231 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	OR4X1	Q8NH49	305 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	ZNF414	Q96IQ9	312 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	ASCL2	Q99929	193 aa		6.96	□□□□□ -1.3
SNHG1-215	ENST00000540904	IGHV3-49	A0A0A0MS15	119 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	ZNF785	A8K8V0	405 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	FAM90A26	D6RGX4	464 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904		K7EMT4	169 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	WRB	O00258	174 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	SCGB2A1	O75556	95 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	H2AFB2	P0C5Z0	115 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	FRMD6-AS1	P0C7T7	363 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	IGHV4-30-4	P0DP06	118 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	SLC25A4	P12235	298 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	RND2	P52198	227 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	CD81	P60033	236 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	ASAH1	Q13510	395 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	ETFRF1	Q6IPR1	90 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	PRSS54	Q6PEW0	395 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	TOMM20L	Q6UXN7	152 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	ZNF600	Q6ZNG1	722 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	RBPMS2	Q6ZRY4	209 aa	Known RBP	6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	MITD1	Q8WV92	249 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	ACY3	Q96HD9	319 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	OR10C1	Q96KK4	312 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	SEC22C	Q9BRL7	303 aa		6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	PAIP2B	Q9ULR5	123 aa	Known RBP	6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	PUS1	Q9Y606	427 aa	Known RBP eCLIP	6.95	□□□□□ -1.3
SNHG1-215	ENST00000540904	TRAV30	A0A087WSZ9	112 aa		6.94	□□□□□ -1.3
SNHG1-215	ENST00000540904	TRAV14DV4	A0A0A6YYC5	116 aa		6.94	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms