RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 FAM223BA6NKX1 122 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 FAM223AQ8IWN6 122 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 BEND2Q8NDZ0 799 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 KIR2DL4Q99706 377 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 SPOCK3Q9BQ16 436 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 AURKAIP1Q9NWT8 199 aaPredicted RBP11.7□□□□□ -0.54
COLCA1-204ENST00000540738 PPP1R17O96001 155 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 EMP1P54849 157 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 ZNF407Q9C0G0 2248 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 TMEM262E9PQX1 116 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 K7EM74 188 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 MBNL3Q9NUK0 354 aaKnown RBP11.7□□□□□ -0.54
COLCA1-204ENST00000540738 NAT1P18440 290 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 LCNL1Q6ZST4 164 aa11.7□□□□□ -0.54
COLCA1-204ENST00000540738 CCKARP32238 428 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 TCF24Q7RTU0 167 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 TNFRSF18Q9Y5U5 241 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 ELOBQ15370 118 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 LTBP2Q14767 1821 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 C2orf68Q2NKX9 166 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 ZNF880Q6PDB4 577 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 SCGB1D4Q6XE38 83 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 ZNF841Q6ZN19 808 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 TMEM190Q8WZ59 177 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 VAMP8Q9BV40 100 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 PIEZO1Q92508 2521 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 NAPSAO96009 420 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 Q6P435 159 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 MAP1LC3AQ9H492 121 aa11.69□□□□□ -0.54
COLCA1-204ENST00000540738 TMEM101Q96IK0 257 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 MCRIP2Q9BUT9 160 aaKnown RBP11.68□□□□□ -0.54
COLCA1-204ENST00000540738 CFHR2P36980 270 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 C2orf83Q53S99 150 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 AP5S1Q9NUS5 200 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 H0YJW9 148 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 OVOL1O14753 267 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 IGLV3-9A0A075B6K5 115 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 C7orf77A4D0Y5 90 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 RAMP3O60896 148 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 CD8AP01732 235 aa11.68□□□□□ -0.54
COLCA1-204ENST00000540738 ITGB1BP1O14713 200 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 SCO1O75880 301 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 IQCJQ1A5X6 159 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 NCOR1P1Q9H4R4 102 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 PTPRQQ9UMZ3 2332 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 SCGB1C2P0DMR2 95 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 SRSF8Q9BRL6 282 aaKnown RBP11.67□□□□□ -0.54
COLCA1-204ENST00000540738 C1QTNF4Q9BXJ3 329 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 OTORQ9NRC9 128 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 PCNX1Q96RV3 2341 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 CD81P60033 236 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 TOMM20LQ6UXN7 152 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 COQ2Q96H96 371 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 E9PQ18 207 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 HLA-DQA1P01909 254 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 CXCL2P19875 107 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 SIGLEC15Q6ZMC9 328 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 DTX2Q86UW9 622 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 CIARTQ8N365 385 aaPredicted RBP11.67□□□□□ -0.54
COLCA1-204ENST00000540738 KIR3DL3Q8N743 410 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 FMC1Q96HJ9 113 aa11.67□□□□□ -0.54
COLCA1-204ENST00000540738 H2BFSP57053 126 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 PGLYRP4Q96LB8 373 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 PLXNA2O75051 1894 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 A0A0A6YYD4 124 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 RNASE4P34096 147 aaKnown RBP11.66□□□□□ -0.54
COLCA1-204ENST00000540738 NEU1Q99519 415 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 ASCL2Q99929 193 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 GSX1Q9H4S2 264 aaPredicted RBP11.66□□□□□ -0.54
COLCA1-204ENST00000540738 PRORYQ9H606 182 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 IFITM3Q01628 133 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 C18orf12Q96KH6 178 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 RUSC1-AS1Q66K80 236 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 OR11H4Q8NGC9 324 aa11.66□□□□□ -0.54
COLCA1-204ENST00000540738 ACACBO00763 2458 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 TRGV11A0A075B6L2 103 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 F8VVB4 439 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 F8VWA3 439 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 DANCRP0C864 163 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 BTF3P20290 206 aaKnown RBP11.65□□□□□ -0.54
COLCA1-204ENST00000540738 RPL29P47914 159 aaKnown RBP11.65□□□□□ -0.54
COLCA1-204ENST00000540738 LYRM7Q5U5X0 104 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 Q71RC1 249 aaPredicted RBP11.65□□□□□ -0.54
COLCA1-204ENST00000540738 SIGLEC9Q9Y336 463 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 PEX7O00628 323 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 TMEM250H0YL14 139 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 CRXO43186 299 aaPredicted RBP11.65□□□□□ -0.54
COLCA1-204ENST00000540738 RNF224P0DH78 156 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 TFF3Q07654 80 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 SPRY4Q9C004 299 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 PEF1Q9UBV8 284 aaKnown RBP11.65□□□□□ -0.54
COLCA1-204ENST00000540738 A0A1B0GWJ7 208 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 DAZAP2Q15038 168 aaPredicted RBP11.65□□□□□ -0.54
COLCA1-204ENST00000540738 ZNF329Q86UD4 541 aa11.65□□□□□ -0.54
COLCA1-204ENST00000540738 CUL9Q8IWT3 2517 aa11.65□□□□□ -0.55
COLCA1-204ENST00000540738 LOC389332A0A1B0GUA5 103 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 NUDT3O95989 172 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 FAM3BP58499 235 aaPredicted RBP11.64□□□□□ -0.55
COLCA1-204ENST00000540738 PSMG4Q5JS54 123 aa11.64□□□□□ -0.55
COLCA1-204ENST00000540738 Q9H3A6 140 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms