RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 FAM72BQ86X60 149 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 ZNF584Q8IVC4 421 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 SPATA3Q8NHX4 192 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 FAM213BQ8TBF2 198 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 ISG20L2Q9H9L3 353 aaKnown RBP4.49□□□□□ -1.69
CD44-231ENST00000531110 PRO0461Q9UI25 63 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 POLR1DQ9Y2S0 133 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 PIKFYVEQ9Y2I7 2098 aa4.49□□□□□ -1.69
CD44-231ENST00000531110 TNRC6AQ8NDV7 1962 aaKnown RBP4.48□□□□□ -1.69
CD44-231ENST00000531110 LTBP4Q8N2S1 1624 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 IGLV5-45A0A087WSX0 123 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 DAPL1A0PJW8 107 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 H3BUT2 72 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 NUPR1O60356 82 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 LMX1BO60663 402 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 SNCGO76070 127 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 IGHV3-7P01780 117 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 IGHG2P01859 326 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 HLA-DQA1P01909 254 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 MT-ATP8P03928 68 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 SMIM13P0DJ93 91 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 CRYGAP11844 174 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 HLA-DRB4P13762 266 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 BCL3P20749 454 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 PSMB8P28062 276 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 SFTPDP35247 375 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 TNFRSF4P43489 277 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 CD164Q04900 197 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 STPG1Q5TH74 334 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 NCBP2-AS2Q69YL0 99 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 SBSPONQ8IVN8 264 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 FAM219AQ8IW50 185 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 CLDN19Q8N6F1 224 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 ZNF645Q8N7E2 425 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 TPRX1Q8N7U7 411 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 TMEM99Q8N816 258 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 NUP35Q8NFH5 326 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 OR5D14Q8NGL3 314 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 OR10Q1Q8NGQ4 319 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 OR2AJ1Q8NGZ0 328 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 OTOSQ8NHW6 89 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 RNF128Q8TEB7 428 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 FGF14Q92915 247 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 ELSPBP1Q96BH3 223 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 ADAT3Q96EY9 351 aaPredicted RBP4.48□□□□□ -1.69
CD44-231ENST00000531110 SMIM7Q9BQ49 75 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 ZNF835Q9Y2P0 537 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 KLHDC2Q9Y2U9 406 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 HLA-DRB4X5D2U9 266 aa4.48□□□□□ -1.69
CD44-231ENST00000531110 COL5A3P25940 1745 aaPredicted RBP4.48□□□□□ -1.69
CD44-231ENST00000531110 SHROOM3Q8TF72 1996 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 KIAA1671Q9BY89 1806 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 FAM240AA0A1B0GVK7 77 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 NDUFC2-KCTD14E9PQ53 114 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 KLF7O75840 302 aaPredicted RBP4.47□□□□□ -1.69
CD44-231ENST00000531110 WISP2O76076 250 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 APOMO95445 188 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 IGHMP01871 453 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 MRPL3P09001 348 aaKnown RBP4.47□□□□□ -1.69
CD44-231ENST00000531110 ZNF688P0C7X2 276 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 P0DMU3 169 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 FAM231AP0DMU4 169 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 FAM231CP0DMU5 169 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 LINC00694P0DN24 101 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 GP9P14770 177 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 MPV17P39210 176 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 PTGDSP41222 190 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 RPS11P62280 158 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-231ENST00000531110 GNG5P63218 68 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 CDKN3Q16667 212 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 IBA57Q5T440 356 aaKnown RBP4.47□□□□□ -1.69
CD44-231ENST00000531110 FAM166AQ6J272 317 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 LCN12Q6JVE5 192 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 TMEM136Q6ZRR5 245 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 MOB3BQ86TA1 216 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 GPR21Q99679 349 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 CLEC7AQ9BXN2 247 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 PARP12Q9H0J9 701 aaKnown RBP4.47□□□□□ -1.69
CD44-231ENST00000531110 SLC39A9Q9NUM3 307 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 R4GN57 208 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 SSC5DA1L4H1 1573 aa4.47□□□□□ -1.69
CD44-231ENST00000531110 KIF26AQ9ULI4 1882 aaPredicted RBP4.47□□□□□ -1.69
CD44-231ENST00000531110 RALGAPA2Q2PPJ7 1873 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 A0A087X0K7 114 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 TRAV24A0A0B4J272 114 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 TRBV5-5A0A0J9YX44 114 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 TRBV7-7A0A0K0K1E9 115 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 A6NIN4 97 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 C2orf70A6NJV1 201 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 LINC01619G3V211 115 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 TMEM178BH3BS89 294 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 K7EN84 100 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 SLC17A2O00624 439 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 DPM2O94777 84 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 NDUFC2O95298 119 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 LGALS1P09382 135 aaKnown RBP4.46□□□□□ -1.7
CD44-231ENST00000531110 IGLC6P0CF74 106 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 HLA-DMBP28068 263 aa4.46□□□□□ -1.7
CD44-231ENST00000531110 PEBP1P30086 187 aaKnown RBP4.46□□□□□ -1.7
CD44-231ENST00000531110 NMUP48645 174 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms