RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RFNGQ9Y644 331 aa16.73■□□□□ 0.27
VPS28-212ENST00000530836 TEX46H3BTG2 121 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 APELAP0DMC3 54 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 S100A1P23297 94 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 NDPQ00604 133 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 TMEM219Q86XT9 240 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 EIF4E3Q8N5X7 224 aaKnown RBP16.72■□□□□ 0.27
VPS28-212ENST00000530836 COMMD1Q8N668 190 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 SIGLECL1Q8N7X8 197 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 MARC2Q969Z3 335 aa16.72■□□□□ 0.27
VPS28-212ENST00000530836 FAM103A1Q9BTL3 118 aaKnown RBP16.72■□□□□ 0.27
VPS28-212ENST00000530836 BTBD17A6NE02 478 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 RPL29P47914 159 aaKnown RBP16.71■□□□□ 0.27
VPS28-212ENST00000530836 MFAP2P55001 183 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 RAB2AP61019 212 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 ACOT6Q3I5F7 207 aaPredicted RBP16.71■□□□□ 0.27
VPS28-212ENST00000530836 FFAR4Q5NUL3 377 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 RBMS3Q6XE24 437 aaKnown RBP16.71■□□□□ 0.27
VPS28-212ENST00000530836 GGTLC1Q9BX51 225 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 HRH4Q9H3N8 390 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 FNDC4Q9H6D8 234 aaPredicted RBP16.71■□□□□ 0.27
VPS28-212ENST00000530836 THYN1Q9P016 225 aa16.71■□□□□ 0.27
VPS28-212ENST00000530836 MDFIC2A0A1B0GVS7 189 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 RAB19A4D1S5 217 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 AGPAT2O15120 278 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 H2AFB1P0C5Y9 115 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 FHITP49789 147 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 ASPHD1Q5U4P2 390 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 TMEM116Q8NCL8 245 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 HSPB9Q9BQS6 159 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 RPRMQ9NS64 109 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 C2CD3Q4AC94 2353 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 MFSD2BA6NFX1 497 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 TCF21O43680 179 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 TSPAN15O95858 294 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 HBE1P02100 147 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 EGR2P11161 476 aaPredicted RBP16.7■□□□□ 0.26
VPS28-212ENST00000530836 M6PRP20645 277 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 IER3P46695 156 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 ELLP55199 621 aaPredicted RBP16.7■□□□□ 0.26
VPS28-212ENST00000530836 AKIRIN2Q53H80 203 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 LFNGQ8NES3 379 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 CITED4Q96RK1 184 aa16.7■□□□□ 0.26
VPS28-212ENST00000530836 HILS1P60008 231 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 LY6EQ16553 131 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 MLANAQ16655 118 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 Q6YL49 198 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 THAP8Q8NA92 274 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 OR2T6Q8NHC8 308 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 ACY3Q96HD9 319 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 PXMP4Q9Y6I8 212 aa16.69■□□□□ 0.26
VPS28-212ENST00000530836 TRAV1-1A0A0B4J248 108 aa16.68■□□□□ 0.26
VPS28-212ENST00000530836 MT-CO2P00403 227 aa16.68■□□□□ 0.26
VPS28-212ENST00000530836 AMY1AP04745 511 aa16.68■□□□□ 0.26
VPS28-212ENST00000530836 HIST1H1BP16401 226 aaKnown RBP16.68■□□□□ 0.26
VPS28-212ENST00000530836 CRIP2P52943 208 aaPredicted RBP16.68■□□□□ 0.26
VPS28-212ENST00000530836 ACSM6Q6P461 480 aa16.68■□□□□ 0.26
VPS28-212ENST00000530836 UQCC3Q6UW78 93 aa16.68■□□□□ 0.26
VPS28-212ENST00000530836 SLC45A2Q9UMX9 530 aa16.68■□□□□ 0.26
VPS28-212ENST00000530836 ATP6V0E1O15342 81 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 B2MP61769 119 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 SELENOTP62341 195 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 KLK9Q2XQG4 91 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 OR10G4Q8NGN3 311 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 OR10G9Q8NGN4 311 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 OR10G7Q8NGN6 311 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 FAM110DQ8TAY7 271 aaPredicted RBP16.67■□□□□ 0.26
VPS28-212ENST00000530836 MBD3L1Q8WWY6 194 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 NPIPB3Q92617 1050 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 JMJD8Q96S16 334 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 KLK9Q9UKQ9 250 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 DMRT1Q9Y5R6 373 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 IGLV11-55A0A075B6I3 123 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 I3L2K1 104 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 PRR20EP86478 221 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 PRR20CP86479 221 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 PRR20DP86480 221 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 PRR20BP86481 221 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 PRR20AP86496 221 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 UNQ5815/PRO19632Q6UWF5 114 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 ACTR3CQ9C0K3 210 aaPredicted RBP16.67■□□□□ 0.26
VPS28-212ENST00000530836 VSIRQ9H7M9 311 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 ESM1Q9NQ30 184 aa16.67■□□□□ 0.26
VPS28-212ENST00000530836 IGKV1OR2-108A0A075B7D4 117 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 RND2P52198 227 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 MIC13Q5XKP0 118 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 STPG3Q8N7X2 389 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 OR4X1Q8NH49 305 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 SFT2D1Q8WV19 159 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 C19orf24Q9BVV8 132 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 SLC39A9Q9NUM3 307 aa16.66■□□□□ 0.26
VPS28-212ENST00000530836 IGHV4-59P01825 116 aa16.65■□□□□ 0.26
VPS28-212ENST00000530836 IGHG2P01859 326 aa16.65■□□□□ 0.26
VPS28-212ENST00000530836 IGF1P05019 195 aa16.65■□□□□ 0.26
VPS28-212ENST00000530836 OR10J1P30954 320 aa16.65■□□□□ 0.26
VPS28-212ENST00000530836 C19orf35Q6ZS72 473 aa16.65■□□□□ 0.26
VPS28-212ENST00000530836 RPP25LQ8N5L8 163 aaKnown RBP16.65■□□□□ 0.26
VPS28-212ENST00000530836 RCC1LQ96I51 464 aaKnown RBP16.65■□□□□ 0.26
VPS28-212ENST00000530836 TRGV9Q99603 122 aa16.65■□□□□ 0.26
VPS28-212ENST00000530836 CTXND1A0A1B0GTU2 59 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms