RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 PUSL1Q8N0Z8 303 aaKnown RBP4.86□□□□□ -1.63
CD44-221ENST00000526000 GBGT1Q8N5D6 347 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 UBAC2Q8NBM4 344 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 GLYATL2Q8WU03 294 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 TMEM230Q96A57 120 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 RNF183Q96D59 192 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 RRNAD1Q96FB5 475 aaKnown RBP4.86□□□□□ -1.63
CD44-221ENST00000526000 SRSF8Q9BRL6 282 aaKnown RBP4.86□□□□□ -1.63
CD44-221ENST00000526000 GPN1Q9HCN4 374 aaPredicted RBP4.86□□□□□ -1.63
CD44-221ENST00000526000 NUDT15Q9NV35 164 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 MRPL27Q9P0M9 148 aaKnown RBP4.86□□□□□ -1.63
CD44-221ENST00000526000 PRNDQ9UKY0 176 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 UFC1Q9Y3C8 167 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 TMED3Q9Y3Q3 217 aa4.86□□□□□ -1.63
CD44-221ENST00000526000 IGLV11-55A0A075B6I3 123 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 TRBV7-1A0A0A6YYK4 115 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 TRAV25A0A0B4J276 109 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 SNRPGP15A8MWD9 76 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 IGLL5B9A064 214 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 INMT-MINDY4F8WBC2 141 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 SNAPC5O75971 98 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 IFNA4P05014 189 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 CRYGCP07315 174 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 OR5AC1P0C628 307 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 C8orf88P0DMB2 117 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 OR13C7P0DN81 318 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 SLC25A6P12236 298 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 HLA-GP17693 338 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 PI3P19957 117 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 VAMP1P23763 118 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 AKR1C2P52895 323 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 SUPT4H1P63272 117 aaKnown RBP4.85□□□□□ -1.63
CD44-221ENST00000526000 DHRS2Q13268 280 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 PPP1R1AQ13522 171 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 OXA1LQ15070 435 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 TRIM16LQ309B1 348 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 ODF3L2Q3SX64 289 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 C4orf46Q504U0 113 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 LGALS9CQ6DKI2 356 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 LAMTOR1Q6IAA8 161 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 H2BFWTQ7Z2G1 175 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 HSD17B13Q7Z5P4 300 aaPredicted RBP4.85□□□□□ -1.63
CD44-221ENST00000526000 DMBX1Q8NFW5 382 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 C11orf45Q8TAV5 145 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 ZNF502Q8TBZ5 544 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 MITD1Q8WV92 249 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 SEC22AQ96IW7 307 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 TP53RKQ96S44 253 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 RARRES2Q99969 163 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 CHRDL1Q9BU40 450 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 NSG2Q9Y328 171 aa4.85□□□□□ -1.63
CD44-221ENST00000526000 TRAV6A0A075B6T7 132 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 IGHV3-66A0A0C4DH42 116 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 A0A1B0GU03 582 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 IGLC7A0M8Q6 106 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 C9orf170A2RU37 121 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 A8MWP6 167 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 UPK2O00526 184 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 UBE2CO00762 179 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 TGOLN2O43493 480 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 YIF1AO95070 293 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 IFNA21P01568 189 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 IGHV3-48P01763 117 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 P0C879 139 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 HIST1H1BP16401 226 aaKnown RBP4.84□□□□□ -1.63
CD44-221ENST00000526000 OR2B8PP59922 312 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 AARDQ4LEZ3 155 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 Q56UQ5 140 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 SELENOHQ8IZQ5 122 aaKnown RBP4.84□□□□□ -1.63
CD44-221ENST00000526000 OR11H2Q8NH07 326 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 OR52E5Q8NH55 327 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 OR4A16Q8NH70 328 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 RNASE11Q8TAA1 199 aaKnown RBP4.84□□□□□ -1.63
CD44-221ENST00000526000 ZNF431Q8TF32 576 aaPredicted RBP4.84□□□□□ -1.63
CD44-221ENST00000526000 MARC2Q969Z3 335 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 CXorf58Q96LI9 332 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 RNF2Q99496 336 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 SPAG8Q99932 426 aaPredicted RBP4.84□□□□□ -1.63
CD44-221ENST00000526000 CSTL1Q9H114 145 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 MAP6D1Q9H9H5 199 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 TMEM140Q9NV12 185 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 FLVCR2Q9UPI3 526 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 TP53TG1Q9Y2A0 90 aa4.84□□□□□ -1.63
CD44-221ENST00000526000 TEX50A0A1B0GTY4 177 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 C7orf66A4D0T2 115 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 DBX1A6NMT0 343 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 C15orf61A6NNL5 157 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 MPTX1A8MV57 137 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 FAM90A26D6RGX4 464 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 INS-IGF2F8WCM5 200 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 M0R2N4 97 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 TSPAN4O14817 238 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 CYB5BO43169 146 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 KRASP01116 189 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 IGKV1-39P01597 117 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 IGKV1D-39P04432 117 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 TRAPPC2P0DI81 140 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 TRAPPC2BP0DI82 140 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 SULT1A3P0DMM9 295 aa4.83□□□□□ -1.64
CD44-221ENST00000526000 SULT1A4P0DMN0 295 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms