RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 POLR2GP62487 172 aaKnown RBP eCLIP0.86□□□□□ -2.27
CD44-215ENST00000525241 CAV1Q03135 178 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 AESQ08117 197 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 FABP9Q0Z7S8 132 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 Q6ZS49 121 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 HIST2H3AQ71DI3 136 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 MRPL30Q8TCC3 161 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 ACOT12Q8WYK0 555 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 CCDC42Q96M95 316 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 PPP1R2P1Q96PQ5 205 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 OR52E6Q96RD3 313 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 RSL24D1Q9UHA3 163 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 LSM5Q9Y4Y9 91 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 TIMM22Q9Y584 194 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 ITPR1Q14643 2758 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 EXPH5Q8NEV8 1989 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 DSTQ03001 7570 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 ALPK2Q86TB3 2170 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 ANAPC1Q9H1A4 1944 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 BSNQ9UPA5 3926 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 TOPBP1Q92547 1522 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 SSPOA2VEC9 5147 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 FAAHO00519 579 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 TTRP02766 147 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 MSMBP08118 114 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 RPL5P46777 297 aaKnown RBP0.85□□□□□ -2.27
CD44-215ENST00000525241 OR4D2P58180 307 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 RPS20P60866 119 aaKnown RBP0.85□□□□□ -2.27
CD44-215ENST00000525241 CCL20P78556 96 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 SRSF6Q13247 344 aaKnown RBP0.85□□□□□ -2.27
CD44-215ENST00000525241 LPCAT3Q6P1A2 487 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 ZNF676Q8N7Q3 588 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.85□□□□□ -2.27
CD44-215ENST00000525241 FKBP14Q9NWM8 211 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 IDI2-AS1Q9NZ38 188 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 VPS29Q9UBQ0 182 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 FUT9Q9Y231 359 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 PKIGQ9Y2B9 76 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 FAT4Q6V0I7 4981 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 DOCK4Q8N1I0 1966 aa0.85□□□□□ -2.27
CD44-215ENST00000525241 KIF24Q5T7B8 1368 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 NUP210LQ5VU65 1888 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 FAM236DA0A1B0GTK5 79 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 A0A1B0GV50 99 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 TMEM210A6NLX4 147 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 TMEM114B3SHH9 223 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 CNIH1O95406 144 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 HLA-DRB1P01911 266 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 FAM236CP0DP71 79 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 CD79AP11912 226 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 HLA-DMBP28068 263 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 HAAOP46952 286 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 OMPP47874 163 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 ZNF80P51504 273 aaPredicted RBP0.84□□□□□ -2.27
CD44-215ENST00000525241 KISS1Q15726 138 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 TRAPPC5Q8IUR0 188 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 RASSF5Q8WWW0 418 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 NIPSNAP1Q9BPW8 284 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 DERL1Q9BUN8 251 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 C20orf27Q9GZN8 174 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 WDR61Q9GZS3 305 aaKnown RBP0.84□□□□□ -2.27
CD44-215ENST00000525241 DCSTAMPQ9H295 470 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 OR51V1Q9H2C8 321 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 EFCAB1Q9HAE3 211 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 PAQR5Q9NXK6 330 aaPredicted RBP0.84□□□□□ -2.27
CD44-215ENST00000525241 IL36BQ9NZH7 164 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 LHFPL6Q9Y693 200 aa0.84□□□□□ -2.27
CD44-215ENST00000525241 TNRC6BQ9UPQ9 1833 aaKnown RBP0.84□□□□□ -2.28
CD44-215ENST00000525241 SONP18583 2426 aaKnown RBP0.84□□□□□ -2.28
CD44-215ENST00000525241 ARHGEF28Q8N1W1 1705 aaKnown RBP0.84□□□□□ -2.28
CD44-215ENST00000525241 DLG5Q8TDM6 1919 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 CEP192Q8TEP8 1941 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 TONSLQ96HA7 1378 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 MYH10P35580 1976 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 TNRC6AQ8NDV7 1962 aaKnown RBP0.83□□□□□ -2.28
CD44-215ENST00000525241 CNOT1A5YKK6 2376 aaKnown RBP0.83□□□□□ -2.28
CD44-215ENST00000525241 SETD5Q9C0A6 1442 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 TRAV26-2A0A0B4J265 109 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 SMIM23A6NLE4 172 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 I3L521 148 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 HCRTO43612 131 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 RPP14O95059 124 aaKnown RBP0.83□□□□□ -2.28
CD44-215ENST00000525241 IGHV3-7P01780 117 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 IFNA6P05013 189 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 KCNE1P15382 129 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 CSN1S1P47710 185 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 CAPZBP47756 277 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 RAB13P51153 203 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 CEBPGP53567 150 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 RPL18Q07020 188 aaKnown RBP0.83□□□□□ -2.28
CD44-215ENST00000525241 IAH1Q2TAA2 248 aaPredicted RBP0.83□□□□□ -2.28
CD44-215ENST00000525241 HIST2H3PS2Q5TEC6 136 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 GLT8D1Q68CQ7 371 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 C20orf196Q8IYI0 205 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 TBC1D19Q8N5T2 526 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 OR8B3Q8NGG8 313 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 OR52L1Q8NGH7 329 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 OR13C4Q8NGS5 318 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 ODF3Q96PU9 254 aa0.83□□□□□ -2.28
CD44-215ENST00000525241 FBXL12Q9NXK8 326 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms