RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TMEM50AO95807 157 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 RBMY1DP0C7P1 496 aaKnown RBP15.65■□□□□ 0.1
VPS28-203ENST00000524521 OPRK1P41145 380 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 HTR2BP41595 481 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 BSXQ3C1V8 233 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 DEDD2Q8WXF8 326 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 SRRQ9GZT4 340 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 FNDC4Q9H6D8 234 aaPredicted RBP15.65■□□□□ 0.1
VPS28-203ENST00000524521 SHPKQ9UHJ6 478 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 STAB2Q8WWQ8 2551 aa15.65■□□□□ 0.1
VPS28-203ENST00000524521 TENM3Q9P273 2699 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 IGHV3-49A0A0A0MS15 119 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 TRAV14DV4A0A0A6YYC5 116 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 IGHV7-4-1A0A0J9YVY3 117 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 TSPAN4O14817 238 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 INPP1P49441 399 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 SRPXP78539 464 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 TMEM128Q5BJH2 165 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 TMEM116Q8NCL8 245 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 OR10C1Q96KK4 312 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 SPAG8Q99932 426 aaPredicted RBP15.64■□□□□ 0.09
VPS28-203ENST00000524521 SLC25A21Q9BQT8 299 aaPredicted RBP15.64■□□□□ 0.09
VPS28-203ENST00000524521 RHPN1-AS1Q9BWJ2 59 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 CACFD1Q9UGQ2 172 aa15.64■□□□□ 0.09
VPS28-203ENST00000524521 CCR6P51684 374 aa15.63■□□□□ 0.09
VPS28-203ENST00000524521 SMCO1Q147U7 214 aa15.63■□□□□ 0.09
VPS28-203ENST00000524521 TOMM20LQ6UXN7 152 aa15.63■□□□□ 0.09
VPS28-203ENST00000524521 HIPK2Q9H2X6 1198 aa15.63■□□□□ 0.09
VPS28-203ENST00000524521 MRPL36Q9P0J6 103 aaKnown RBP15.63■□□□□ 0.09
VPS28-203ENST00000524521 CHEK1O14757 476 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 VAMP1P23763 118 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 BAK1Q16611 211 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 C2orf83Q53S99 150 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 NMSQ5H8A3 153 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 ZNF600Q6ZNG1 722 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 OR4X1Q8NH49 305 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 RNF2Q99496 336 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 GINS3Q9BRX5 216 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 NDUFA13Q9P0J0 144 aa15.62■□□□□ 0.09
VPS28-203ENST00000524521 PUS1Q9Y606 427 aaKnown RBP eCLIP15.62■□□□□ 0.09
VPS28-203ENST00000524521 IGHV3OR16-13A0A075B7E8 117 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 IGHV3-74A0A0B4J1X5 117 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 RPS10-NUDT3A0A1W2PQS6 291 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 CLN5O75503 358 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 TNFRSF9Q07011 255 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 TRIQKQ629K1 86 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 SLC24A4Q8NFF2 622 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 CITED4Q96RK1 184 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 UBQLN2Q9UHD9 624 aa15.61■□□□□ 0.09
VPS28-203ENST00000524521 PIGBOS1A0A0B4J2F0 54 aa15.6■□□□□ 0.09
VPS28-203ENST00000524521 OR1S1Q8NH92 325 aa15.6■□□□□ 0.09
VPS28-203ENST00000524521 MUC7Q8TAX7 377 aa15.6■□□□□ 0.09
VPS28-203ENST00000524521 RBKSQ9H477 322 aa15.6■□□□□ 0.09
VPS28-203ENST00000524521 RETNQ9HD89 108 aa15.6■□□□□ 0.09
VPS28-203ENST00000524521 HSPB7Q9UBY9 170 aa15.6■□□□□ 0.09
VPS28-203ENST00000524521 A0A1B0GU03 582 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 LINC00854A0A1B0GVQ3 168 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 OR4C46A6NHA9 309 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 C3orf84H3BNL1 204 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 SCGB2A1O75556 95 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 IFNA10P01566 189 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 NPY1RP25929 384 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 NOXA1Q86UR1 476 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 CENPSQ8N2Z9 138 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 RNASEH2CQ8TDP1 164 aaKnown RBP15.59■□□□□ 0.09
VPS28-203ENST00000524521 DTD1Q8TEA8 209 aa15.59■□□□□ 0.09
VPS28-203ENST00000524521 HUWE1Q7Z6Z7 4374 aaKnown RBP15.58■□□□□ 0.09
VPS28-203ENST00000524521 IGKV3-7A0A075B6H7 116 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 TRAV30A0A087WSZ9 112 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 DUXBA0A1W2PPF3 345 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 SFT2D2O95562 160 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 PPP1R1AQ13522 171 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 RBMS2Q15434 407 aaKnown RBP15.58■□□□□ 0.08
VPS28-203ENST00000524521 TIGITQ495A1 244 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 TMEM170AQ8WVE7 144 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 ZFAND3Q9H8U3 227 aa15.58■□□□□ 0.08
VPS28-203ENST00000524521 LOC102724200A0A096LPH7 203 aaPredicted RBP15.57■□□□□ 0.08
VPS28-203ENST00000524521 NAP1L6A6NFF2 107 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 APOHP02749 345 aaPredicted RBP15.57■□□□□ 0.08
VPS28-203ENST00000524521 SLC25A4P12235 298 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 BMI1P35226 326 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 TFPI2P48307 235 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 RND2P52198 227 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 PRSS54Q6PEW0 395 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 LRTM2Q8N967 370 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 ST8SIA2Q92186 375 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 SDHCQ99643 169 aaPredicted RBP15.57■□□□□ 0.08
VPS28-203ENST00000524521 FAM110AQ9BQ89 295 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 GGTLC1Q9BX51 225 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 U3KQ87 197 aa15.57■□□□□ 0.08
VPS28-203ENST00000524521 IGHV3-66A0A0C4DH42 116 aa15.56■□□□□ 0.08
VPS28-203ENST00000524521 IGKV1-17P01599 117 aa15.56■□□□□ 0.08
VPS28-203ENST00000524521 NPPCP23582 126 aa15.56■□□□□ 0.08
VPS28-203ENST00000524521 ETFRF1Q6IPR1 90 aa15.56■□□□□ 0.08
VPS28-203ENST00000524521 TCF24Q7RTU0 167 aa15.56■□□□□ 0.08
VPS28-203ENST00000524521 GBGT1Q8N5D6 347 aa15.56■□□□□ 0.08
VPS28-203ENST00000524521 ODF3L2Q3SX64 289 aa15.55■□□□□ 0.08
VPS28-203ENST00000524521 FAM90A2PQ658T7 463 aa15.55■□□□□ 0.08
VPS28-203ENST00000524521 LILRB2Q8N423 598 aa15.55■□□□□ 0.08
VPS28-203ENST00000524521 VSIRQ9H7M9 311 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms