RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	TMEM8B	A6NDV4	472 aa		11.96	□□□□□ -0.49
TRIO-222	ENST00000515144	PTPRQ	Q9UMZ3	2332 aa		11.96	□□□□□ -0.49
TRIO-222	ENST00000515144	ZMAT5	Q9UDW3	170 aa	Known RBP	11.96	□□□□□ -0.49
TRIO-222	ENST00000515144	FAM208B	Q5VWN6	2430 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	EFNA2	O43921	213 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	RPL15	P61313	204 aa	Known RBP	11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	UBE2E2	Q96LR5	201 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	IFI27L2	Q9H2X8	130 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	PAX8	Q06710	450 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	FOXC2	Q99958	501 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	TMEM218	A2RU14	115 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	TMEM30B	Q3MIR4	351 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	FAM90A1	Q86YD7	464 aa		11.96	□□□□□ -0.5
TRIO-222	ENST00000515144	GNG5	P63218	68 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	SPSB4	Q96A44	273 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	MYOD1	P15172	320 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	C11orf91	Q3C1V1	193 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	C5orf24	Q7Z6I8	188 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	MEF2B	Q02080	365 aa	Predicted RBP	11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	DNLZ	Q5SXM8	178 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	ZNF474	Q6S9Z5	364 aa	Predicted RBP	11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	SEC11B	P0C7V7	166 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	ASIP	P42127	132 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144		Q6ZS92	163 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	TRGC1	P0CF51	173 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	FBLN7	Q53RD9	439 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144	TMEM160	Q9NX00	188 aa		11.95	□□□□□ -0.5
TRIO-222	ENST00000515144		M0QZK8	103 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	LGALS3	P17931	250 aa	Known RBP	11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	GATA4	P43694	442 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	SMIM8	Q96KF7	97 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	DNAH12	Q6ZR08	3092 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	LOC107984156	A0A0G2JMH3	177 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	RAB9A	P51151	201 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	ARL17A	Q8IVW1	177 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	PRR14L	Q5THK1	2151 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144		J3QW42	95 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	OR5AN1	Q8NGI8	311 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	OR9G4	Q8NGQ1	327 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	MRPL18	Q9H0U6	180 aa	Known RBP	11.94	□□□□□ -0.5
TRIO-222	ENST00000515144		Q9H3A6	140 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	GCG	P01275	180 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	IGHV3-53	P01767	116 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	C15orf32	Q32M92	178 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	OR4D5	Q8NGN0	318 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	SCO2	A0A1W2PP80	73 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	GCHFR	P30047	84 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	ACTL10	Q5JWF8	245 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	LINC00114	Q6XXX2	140 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	BMPER	Q8N8U9	685 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	ZNRD1	Q9P1U0	126 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	NUP210L	Q5VU65	1888 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	H2BFS	P57053	126 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	KLF17	Q5JT82	389 aa	Predicted RBP	11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	TMEM170B	Q5T4T1	132 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	ATOH7	Q8N100	152 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	C2orf88	Q9BSF0	95 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	NPCDR1	Q9BY65	106 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	TUBD1	Q9UJT1	453 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	CDC42EP3	Q9UKI2	254 aa		11.94	□□□□□ -0.5
TRIO-222	ENST00000515144	TRAV41	A0A0B4J266	112 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	IGKV1D-13	A0A0B4J2D9	117 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	IGKV1-13	P0DP09	117 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	MIR17HG	Q75NE6	70 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	IFITM10	A6NMD0	228 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144		A6NNC1	897 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	SAA4	P35542	130 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	TM2D1	Q9BX74	207 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	LINC00205	P59089	165 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	MRPL13	Q9BYD1	178 aa	Known RBP	11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	PSCA	O43653	123 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	TCF24	Q7RTU0	167 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	OR52E5	Q8NH55	327 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	PLXNB1	O43157	2135 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	CACNG7	P62955	275 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	TCF15	Q12870	199 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	BIVM	Q86UB2	503 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	PIP4P2	Q8N4L2	257 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	YPEL1	O60688	119 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	YPEL2	Q96QA6	119 aa		11.93	□□□□□ -0.5
TRIO-222	ENST00000515144	PEX7	O00628	323 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	FAM90A26	D6RGX4	464 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	C10orf55	Q5SWW7	151 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	SIGLEC15	Q6ZMC9	328 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	TRAV20	A0A0B4J274	112 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	CIDEA	O60543	219 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	SFRP2	Q96HF1	295 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	ZFP30	Q9Y2G7	519 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	IGHV1-8	P0DP01	117 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	GFI1B	Q5VTD9	330 aa		11.92	□□□□□ -0.5
TRIO-222	ENST00000515144	MRPL32	Q9BYC8	188 aa	Known RBP	11.92	□□□□□ -0.5
TRIO-222	ENST00000515144		A0A1B0GTI1	187 aa		11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	FAM74A7	A6NL05	159 aa		11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	DIRC3	C9JPN6	131 aa		11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	CIRBP	Q14011	172 aa	Known RBP	11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	ASCL4	Q6XD76	172 aa		11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	HIST1H4G	Q99525	98 aa		11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	PARL	Q9H300	379 aa		11.91	□□□□□ -0.5
TRIO-222	ENST00000515144	ZNF688	P0C7X2	276 aa		11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms