RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TMEM116Q8NCL8 245 aa7.28□□□□□ -1.24
RNF4-221ENST00000513643 RNASEH2CQ8TDP1 164 aaKnown RBP7.28□□□□□ -1.24
RNF4-221ENST00000513643 WDR89Q96FK6 387 aaPredicted RBP7.28□□□□□ -1.24
RNF4-221ENST00000513643 TM2D3Q9BRN9 247 aa7.28□□□□□ -1.24
RNF4-221ENST00000513643 PDCD10Q9BUL8 212 aa7.28□□□□□ -1.24
RNF4-221ENST00000513643 DYNC2H1Q8NCM8 4307 aaKnown RBP7.28□□□□□ -1.24
RNF4-221ENST00000513643 SACSQ9NZJ4 4579 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 C9orf170A2RU37 121 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 TSPAN4O14817 238 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 NUPL2O15504 423 aaKnown RBP7.27□□□□□ -1.25
RNF4-221ENST00000513643 CLN5O75503 358 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 IGKV1-17P01599 117 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 CD7P09564 240 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 HOXA1P49639 335 aaPredicted RBP7.27□□□□□ -1.25
RNF4-221ENST00000513643 ATP5IP56385 69 aaPredicted RBP7.27□□□□□ -1.25
RNF4-221ENST00000513643 RELQ04864 619 aaPredicted RBP7.27□□□□□ -1.25
RNF4-221ENST00000513643 CNPY1Q3B7I2 92 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 Q56UQ5 140 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 TRIQKQ629K1 86 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 FAM90A2PQ658T7 463 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 CENPSQ8N2Z9 138 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 DUSP18Q8NEJ0 188 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 ZFAND3Q9H8U3 227 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 SMPXQ9UHP9 88 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 FLVCR2Q9UPI3 526 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 TMED3Q9Y3Q3 217 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 U3KQ87 197 aa7.27□□□□□ -1.25
RNF4-221ENST00000513643 RYR3Q15413 4870 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 IGHV7-4-1A0A0J9YVY3 117 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 FAM90A26D6RGX4 464 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 CHEK1O14757 476 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 NXPH3O95157 252 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 PRSS54Q6PEW0 395 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 BTNL8Q6UX41 500 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 TOMM20LQ6UXN7 152 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 GTSCR1Q86UQ5 136 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 UBAC2Q8NBM4 344 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 SLC24A4Q8NFF2 622 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 RNASE11Q8TAA1 199 aaKnown RBP7.26□□□□□ -1.25
RNF4-221ENST00000513643 DYNLRB2Q8TF09 96 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 PINX1Q96BK5 328 aaKnown RBP7.26□□□□□ -1.25
RNF4-221ENST00000513643 ASCL2Q99929 193 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 NEURL2Q9BR09 285 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 CCDC32Q9BV29 185 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 RBKSQ9H477 322 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 VSIRQ9H7M9 311 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 ENY2Q9NPA8 101 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 HEYLQ9NQ87 328 aaPredicted RBP7.26□□□□□ -1.25
RNF4-221ENST00000513643 U3KQK5 164 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 CSMD3Q7Z407 3707 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 STARD9Q9P2P6 4700 aa7.26□□□□□ -1.25
RNF4-221ENST00000513643 CEBPZOSA8MTT3 80 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 GNG7O60262 68 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 SCAF4O95104 1147 aaKnown RBP7.25□□□□□ -1.25
RNF4-221ENST00000513643 OR4E1P0C645 316 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 IGLC1P0CG04 106 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 SLC25A4P12235 298 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 VAMP1P23763 118 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 ID3Q02535 119 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 DHRS2Q13268 280 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 HAGHQ16775 308 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 ZNF600Q6ZNG1 722 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 LILRB2Q8N423 598 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 DTD1Q8TEA8 209 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 SPAG8Q99932 426 aaPredicted RBP7.25□□□□□ -1.25
RNF4-221ENST00000513643 FAM110AQ9BQ89 295 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 HIPK2Q9H2X6 1198 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 U3KQE9 123 aa7.25□□□□□ -1.25
RNF4-221ENST00000513643 IGHV3OR16-8A0A075B7F1 116 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 TRAV30A0A087WSZ9 112 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 TRAV14DV4A0A0A6YYC5 116 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 RPS10-NUDT3A0A1W2PQS6 291 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 RBMY1BA6NDE4 496 aaKnown RBP7.24□□□□□ -1.25
RNF4-221ENST00000513643 RBMY1EA6NEQ0 496 aaKnown RBP7.24□□□□□ -1.25
RNF4-221ENST00000513643 CENPXA8MT69 81 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 PRSS46E5RG02 174 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 LYRM1O43325 122 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 RBMY1DP0C7P1 496 aaKnown RBP7.24□□□□□ -1.25
RNF4-221ENST00000513643 ANXA7P20073 488 aaKnown RBP7.24□□□□□ -1.25
RNF4-221ENST00000513643 NPY1RP25929 384 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 OPRK1P41145 380 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 CD81P60033 236 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 YPEL3P61236 119 aaPredicted RBP7.24□□□□□ -1.25
RNF4-221ENST00000513643 GGNBP1Q5YKI7 109 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 LYG2Q86SG7 212 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 NOXA1Q86UR1 476 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 DEFB125Q8N687 156 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 MITD1Q8WV92 249 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 WWC2-AS2Q96NR7 200 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 CITED4Q96RK1 184 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 RNF2Q99496 336 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 C20orf24Q9BUV8 137 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 RHPN1-AS1Q9BWJ2 59 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 TBC1D24Q9ULP9 559 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 PUS1Q9Y606 427 aaKnown RBP eCLIP7.24□□□□□ -1.25
RNF4-221ENST00000513643 SELENOKQ9Y6D0 94 aa7.24□□□□□ -1.25
RNF4-221ENST00000513643 MPTX1A8MV57 137 aa7.23□□□□□ -1.25
RNF4-221ENST00000513643 OR11H12B2RN74 326 aa7.23□□□□□ -1.25
RNF4-221ENST00000513643 ZNF207O43670 478 aaKnown RBP7.23□□□□□ -1.25
RNF4-221ENST00000513643 ADAP1O75689 374 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms