RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 LTN1O94822 1766 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 CENPVL1A0A0U1RR11 272 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 HRKO00198 91 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 PEAR1Q5VY43 1037 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 LINC01587Q99440 93 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 PHLPP1O60346 1717 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 TRGV2A0A075B6R0 118 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 RNASE4P34096 147 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 ETDBQ3ZM63 59 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 ZNF826PQ6ZT77 177 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 C1orf162Q8NEQ5 155 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 CCDC88CQ9P219 2028 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 ANKRD36CQ5JPF3 1778 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 D6R8Y8 96 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 GLRXP35754 106 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 TCTEX1D4Q5JR98 221 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 CTHRC1Q96CG8 243 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 NAA38Q9BRA0 125 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 IGHV1OR15-9A0A0B4J2B8 117 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 TMEM240Q5SV17 173 aa9.38□□□□□ -0.91
LIMCH1-217ENST00000512946 B9A039 149 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 IGLV3-21P80748 117 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 ARRDC1-AS1Q9H2J1 176 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 FER1L6Q2WGJ9 1857 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 KDM3BQ7LBC6 1761 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 ZFC3H1O60293 1989 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 A0A1W2PPM0 123 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 TMEM167AQ8TBQ9 72 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 SSC4DQ8WTU2 575 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 TIMM21Q9BVV7 248 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 ZNF646O15015 1829 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 TMEM141Q96I45 108 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 SDK1Q7Z5N4 2213 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 SYNJ2BPP57105 145 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 GPHA2Q96T91 129 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 DTX4Q9Y2E6 619 aa9.37□□□□□ -0.91
LIMCH1-217ENST00000512946 NUP214P35658 2090 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 COX8AP10176 69 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 UCNP55089 124 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 C9orf172C9J069 976 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 HOXD3P31249 432 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 LINC01545Q5VT33 79 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 LTBP4Q8N2S1 1624 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 IGHV2-26A0A0B4J1V2 119 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 EFEMP2O95967 443 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 NPSP0C0P6 89 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 LGALS9BQ3B8N2 356 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 RPL39P5Q59GN2 51 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 LGALS9CQ6DKI2 356 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 LCN12Q6JVE5 192 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 LHFPL1Q86WI0 220 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 C1QTNF5Q9BXJ0 243 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 FBXL15Q9H469 300 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 STRCP1A6NGW2 1772 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 PROB1E7EW31 1015 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 RPL36AP83881 106 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 FHL5Q5TD97 284 aa9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 RPL36ALQ969Q0 106 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-217ENST00000512946 IGHV2OR16-5A0A0B4J2B6 119 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 NPIPB5A8MRT5 1133 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 ATOX1O00244 68 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 HLA-DMBP28068 263 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 SMIM20Q8N5G0 67 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 PCM1Q15154 2024 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 TMEM52Q8NDY8 209 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 NUP35Q8NFH5 326 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 WFDC1Q9HC57 220 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 ZNF492Q9P255 531 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 DNAJC13O75165 2243 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 TCRAP04437 139 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 PRADC1Q9BSG0 188 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 R3HDMLQ9H3Y0 253 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 MAP1BP46821 2468 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 COL16A1Q07092 1604 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 TJP1Q07157 1748 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 GNG5P63218 68 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 FAM219BQ5XKK7 198 aa9.35□□□□□ -0.91
LIMCH1-217ENST00000512946 TRGV9Q99603 122 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 RNF5Q99942 180 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 REPIN1Q9BWE0 567 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 SMIM10L1P0DMW3 83 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 TMEM14EPQ6UXP3 125 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 SLC25A28Q96A46 364 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 SMIM10Q96HG1 83 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 LINC00477Q96M19 166 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 VGLL1Q99990 258 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 KIAA0100Q14667 2235 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 GOLGB1Q14789 3259 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 NCR2O95944 276 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 TREML4Q6UXN2 200 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 KNCNA6PVL3 124 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 B5MCH6 92 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 AMN1Q8IY45 258 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 PRO1854Q9UHT4 67 aa9.34□□□□□ -0.91
LIMCH1-217ENST00000512946 YPEL3P61236 119 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 C9orf139Q6ZV77 190 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 CENPVQ7Z7K6 275 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 TMEM158Q8WZ71 300 aa9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNF501Q96CX3 271 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-217ENST00000512946 NBR2O15453 112 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms