RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 WIPF2Q8TF74 440 aaPredicted RBP3.01□□□□□ -1.93
USP53-205ENST00000509769 SLC25A28Q96A46 364 aa3.01□□□□□ -1.93
USP53-205ENST00000509769 TRGV9Q99603 122 aa3.01□□□□□ -1.93
USP53-205ENST00000509769 PLA2G3Q9NZ20 509 aa3.01□□□□□ -1.93
USP53-205ENST00000509769 FOXA2Q9Y261 457 aaPredicted RBP3.01□□□□□ -1.93
USP53-205ENST00000509769 PPIL1Q9Y3C6 166 aa3.01□□□□□ -1.93
USP53-205ENST00000509769 COL4A1P02462 1669 aa3.01□□□□□ -1.93
USP53-205ENST00000509769 A0A1W2PPE3 182 aa3□□□□□ -1.93
USP53-205ENST00000509769 SMIM9A6NGZ8 99 aa3□□□□□ -1.93
USP53-205ENST00000509769 LILRA5A6NI73 299 aa3□□□□□ -1.93
USP53-205ENST00000509769 M0R381 172 aa3□□□□□ -1.93
USP53-205ENST00000509769 EFEMP2O95967 443 aa3□□□□□ -1.93
USP53-205ENST00000509769 COX6A1P12074 109 aa3□□□□□ -1.93
USP53-205ENST00000509769 GFRA1P56159 465 aa3□□□□□ -1.93
USP53-205ENST00000509769 C3AR1Q16581 482 aa3□□□□□ -1.93
USP53-205ENST00000509769 PRR30Q53SZ7 412 aaPredicted RBP3□□□□□ -1.93
USP53-205ENST00000509769 FAM78AQ5JUQ0 283 aa3□□□□□ -1.93
USP53-205ENST00000509769 FAM201AQ5SY85 155 aa3□□□□□ -1.93
USP53-205ENST00000509769 ATRAIDQ6UW56 229 aa3□□□□□ -1.93
USP53-205ENST00000509769 FOXI2Q6ZQN5 318 aa3□□□□□ -1.93
USP53-205ENST00000509769 ZNF525Q8N782 197 aa3□□□□□ -1.93
USP53-205ENST00000509769 C17orf47Q8NEP4 570 aa3□□□□□ -1.93
USP53-205ENST00000509769 SCAMP4Q969E2 229 aa3□□□□□ -1.93
USP53-205ENST00000509769 TRMT61AQ96FX7 289 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 HS3ST6Q96QI5 342 aa3□□□□□ -1.93
USP53-205ENST00000509769 DSCR8Q96T75 97 aa3□□□□□ -1.93
USP53-205ENST00000509769 SF3B6Q9Y3B4 125 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 LOC285556D6RIA3 1793 aa3□□□□□ -1.93
USP53-205ENST00000509769 KIAA0100Q14667 2235 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3□□□□□ -1.93
USP53-205ENST00000509769 TRAV24A0A0B4J272 114 aa3□□□□□ -1.93
USP53-205ENST00000509769 A0A0D9SEW6 157 aa3□□□□□ -1.93
USP53-205ENST00000509769 A0A1B0GX51 115 aa3□□□□□ -1.93
USP53-205ENST00000509769 CCL16O15467 120 aa3□□□□□ -1.93
USP53-205ENST00000509769 IGHMP01871 453 aa3□□□□□ -1.93
USP53-205ENST00000509769 EGR2P11161 476 aaPredicted RBP3□□□□□ -1.93
USP53-205ENST00000509769 GLRXP35754 106 aa3□□□□□ -1.93
USP53-205ENST00000509769 LOXL3P58215 753 aa3□□□□□ -1.93
USP53-205ENST00000509769 CXCL6P80162 114 aa3□□□□□ -1.93
USP53-205ENST00000509769 MRPS21P82921 87 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 CFHR1Q03591 330 aa3□□□□□ -1.93
USP53-205ENST00000509769 TNXAQ16473 311 aa3□□□□□ -1.93
USP53-205ENST00000509769 NNATQ16517 81 aa3□□□□□ -1.93
USP53-205ENST00000509769 LCNL1Q6ZST4 164 aa3□□□□□ -1.93
USP53-205ENST00000509769 Q6ZUT4 128 aa3□□□□□ -1.93
USP53-205ENST00000509769 MARCH3Q86UD3 253 aa3□□□□□ -1.93
USP53-205ENST00000509769 PIFOQ8TCI5 191 aa3□□□□□ -1.93
USP53-205ENST00000509769 VKORC1Q9BQB6 163 aa3□□□□□ -1.93
USP53-205ENST00000509769 C5orf66Q9H5L9 145 aa3□□□□□ -1.93
USP53-205ENST00000509769 FRRS1LQ9P0K9 344 aa3□□□□□ -1.93
USP53-205ENST00000509769 C5AR2Q9P296 337 aa3□□□□□ -1.93
USP53-205ENST00000509769 PRSS38A1L453 326 aa3□□□□□ -1.93
USP53-205ENST00000509769 TMEM14DPA8MWL7 114 aa3□□□□□ -1.93
USP53-205ENST00000509769 C22orf46C9J442 243 aa3□□□□□ -1.93
USP53-205ENST00000509769 C9JQL5 133 aa3□□□□□ -1.93
USP53-205ENST00000509769 OVOL1O14753 267 aa3□□□□□ -1.93
USP53-205ENST00000509769 BUB3O43684 328 aa3□□□□□ -1.93
USP53-205ENST00000509769 IGLC1P0CG04 106 aa3□□□□□ -1.93
USP53-205ENST00000509769 FAM157BP0CG42 384 aa3□□□□□ -1.93
USP53-205ENST00000509769 NDUFV3P56181 108 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 SEC61GP60059 68 aa3□□□□□ -1.93
USP53-205ENST00000509769 FOXI1Q12951 378 aa3□□□□□ -1.93
USP53-205ENST00000509769 TGIF1Q15583 401 aa3□□□□□ -1.93
USP53-205ENST00000509769 METRNLQ641Q3 311 aa3□□□□□ -1.93
USP53-205ENST00000509769 LCN12Q6JVE5 192 aa3□□□□□ -1.93
USP53-205ENST00000509769 C18orf12Q96KH6 178 aa3□□□□□ -1.93
USP53-205ENST00000509769 PILRBQ9UKJ0 227 aa3□□□□□ -1.93
USP53-205ENST00000509769 SERP1Q9Y6X1 66 aa3□□□□□ -1.93
USP53-205ENST00000509769 A0A1B0GUL6 1792 aa3□□□□□ -1.93
USP53-205ENST00000509769 SIPA1L3O60292 1781 aaPredicted RBP3□□□□□ -1.93
USP53-205ENST00000509769 PLXNA3P51805 1871 aa3□□□□□ -1.93
USP53-205ENST00000509769 TRAV14DV4A0A0A6YYC5 116 aa3□□□□□ -1.93
USP53-205ENST00000509769 NDUFA3O95167 84 aa3□□□□□ -1.93
USP53-205ENST00000509769 RNASE1P07998 156 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 CELA3AP09093 270 aa3□□□□□ -1.93
USP53-205ENST00000509769 MDKP21741 143 aaPredicted RBP3□□□□□ -1.93
USP53-205ENST00000509769 SNRPD3P62318 126 aaKnown RBP3□□□□□ -1.93
USP53-205ENST00000509769 NKG7Q16617 165 aa3□□□□□ -1.93
USP53-205ENST00000509769 SLC25A53Q5H9E4 307 aa3□□□□□ -1.93
USP53-205ENST00000509769 FAM27D1Q5T7N8 215 aa3□□□□□ -1.93
USP53-205ENST00000509769 LY6G5BQ8NDX9 201 aa3□□□□□ -1.93
USP53-205ENST00000509769 KLF16Q9BXK1 252 aaPredicted RBP3□□□□□ -1.93
USP53-205ENST00000509769 CACNA1AO00555 2505 aa3□□□□□ -1.93
USP53-205ENST00000509769 hDV102S1A0JD36 115 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 TM4SF5O14894 197 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 PF4P02776 101 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 CXCL10P02778 98 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 KIRREL2Q6UWL6 708 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 ATG4DQ86TL0 474 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 TMEM54Q969K7 222 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 PRO0628Q9UI54 55 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 CHCHD2Q9Y6H1 151 aaPredicted RBP2.99□□□□□ -1.93
USP53-205ENST00000509769 FRMPD3Q5JV73 1810 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 A4D1N5 150 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 D6R8Y8 96 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 H3BTX0 84 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 SOCS1O15524 211 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 PROP1O75360 226 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 NDUFA7O95182 113 aa2.99□□□□□ -1.93
USP53-205ENST00000509769 MUSTN1Q8IVN3 82 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms