RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 MARC2Q969Z3 335 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 WDR12Q9GZL7 423 aaKnown RBP12.08□□□□□ -0.48
LIME1-209ENST00000494776 RBKSQ9H477 322 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 HSPB7Q9UBY9 170 aa12.08□□□□□ -0.48
LIME1-209ENST00000494776 IZUMO1RA6ND01 250 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 SCGB2A1O75556 95 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 NPY1RP25929 384 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 ELLP55199 621 aaPredicted RBP12.07□□□□□ -0.48
LIME1-209ENST00000494776 DHRS2Q13268 280 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 GUCA2BQ16661 112 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 BSXQ3C1V8 233 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 C2orf83Q53S99 150 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 PVRIGQ6DKI7 326 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 LYG2Q86SG7 212 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 TMEM190Q8WZ59 177 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 C20orf85Q9H1P6 137 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 MRPL27Q9P0M9 148 aaKnown RBP12.07□□□□□ -0.48
LIME1-209ENST00000494776 SELENOKQ9Y6D0 94 aa12.07□□□□□ -0.48
LIME1-209ENST00000494776 DNAH3Q8TD57 4116 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 IGHV3OR16-8A0A075B7F1 116 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 IFNA21P01568 189 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 SLC25A6P12236 298 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 GGNBP1Q5YKI7 109 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 MZT2BQ6NZ67 158 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 RNASEH2CQ8TDP1 164 aaKnown RBP12.06□□□□□ -0.48
LIME1-209ENST00000494776 B9D2Q9BPU9 175 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 DAZ1Q9NQZ3 744 aaKnown RBP12.06□□□□□ -0.48
LIME1-209ENST00000494776 U3KQ87 197 aa12.06□□□□□ -0.48
LIME1-209ENST00000494776 TRAV6A0A075B6T7 132 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 ZNF207O43670 478 aaKnown RBP12.05□□□□□ -0.48
LIME1-209ENST00000494776 MED6O75586 246 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 TCRBP04435 133 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 MLANAQ16655 118 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 ETFRF1Q6IPR1 90 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 C11orf87Q6NUJ2 197 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 BTNL8Q6UX41 500 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 FNDC4Q9H6D8 234 aaPredicted RBP12.05□□□□□ -0.48
LIME1-209ENST00000494776 MLXQ9UH92 298 aa12.05□□□□□ -0.48
LIME1-209ENST00000494776 FAM240BA0A1B0GVZ2 78 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 C15orf62A8K5M9 175 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 FAM90A26D6RGX4 464 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 K7EMT4 169 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 PITX3O75364 302 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 ADAP1O75689 374 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 TMEM50AO95807 157 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 IFNA4P05014 189 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 RBPMS2Q6ZRY4 209 aaKnown RBP12.04□□□□□ -0.48
LIME1-209ENST00000494776 OR4X1Q8NH49 305 aa12.04□□□□□ -0.48
LIME1-209ENST00000494776 WDR89Q96FK6 387 aaPredicted RBP12.04□□□□□ -0.48
LIME1-209ENST00000494776 PAIP2BQ9ULR5 123 aaKnown RBP12.04□□□□□ -0.48
LIME1-209ENST00000494776 SORL1Q92673 2214 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 CLN5O75503 358 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 C8orf88P0DMB2 117 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 IAPPP10997 89 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 SLC25A4P12235 298 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 ZNF600Q6ZNG1 722 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 OR52B4Q8NGK2 314 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 GINS3Q9BRX5 216 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 NUDT15Q9NV35 164 aa12.03□□□□□ -0.48
LIME1-209ENST00000494776 TRAV30A0A087WSZ9 112 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 ZNF785A8K8V0 405 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 UPK1BO75841 260 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 SCAF4O95104 1147 aaKnown RBP12.02□□□□□ -0.49
LIME1-209ENST00000494776 H2AFB2P0C5Z0 115 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 RND2P52198 227 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 ATP5IP56385 69 aaPredicted RBP12.02□□□□□ -0.49
LIME1-209ENST00000494776 CD81P60033 236 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 RAB11AP62491 216 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 RPP30P78346 268 aaKnown RBP12.02□□□□□ -0.49
LIME1-209ENST00000494776 LAMTOR1Q6IAA8 161 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 TMEM61Q8N0U2 210 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 Q8N1Y9 231 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 CIB3Q96Q77 187 aaPredicted RBP12.02□□□□□ -0.49
LIME1-209ENST00000494776 ASCL2Q99929 193 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 MAGT1Q9H0U3 335 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 TUBA4BQ9H853 241 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 MRPL36Q9P0J6 103 aaKnown RBP12.02□□□□□ -0.49
LIME1-209ENST00000494776 TBC1D24Q9ULP9 559 aa12.02□□□□□ -0.49
LIME1-209ENST00000494776 PUS1Q9Y606 427 aaKnown RBP eCLIP12.02□□□□□ -0.49
LIME1-209ENST00000494776 TRAV14DV4A0A0A6YYC5 116 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 WRBO00258 174 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 SYNGR2O43760 224 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 IGHV4-30-4P0DP06 118 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 ASAH1Q13510 395 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 PRSS54Q6PEW0 395 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 TMEM116Q8NCL8 245 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 ENKURQ8TC29 256 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 MITD1Q8WV92 249 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 TMEM170AQ8WVE7 144 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 ACY3Q96HD9 319 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 OR10C1Q96KK4 312 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 NEURL2Q9BR09 285 aa12.01□□□□□ -0.49
LIME1-209ENST00000494776 TRAV25A0A0B4J276 109 aa12□□□□□ -0.49
LIME1-209ENST00000494776 IGHV7-4-1A0A0J9YVY3 117 aa12□□□□□ -0.49
LIME1-209ENST00000494776 MPTX1A8MV57 137 aa12□□□□□ -0.49
LIME1-209ENST00000494776 FRMD6-AS1P0C7T7 363 aa12□□□□□ -0.49
LIME1-209ENST00000494776 NHLRC4P0CG21 123 aaPredicted RBP12□□□□□ -0.49
LIME1-209ENST00000494776 BMI1P35226 326 aa12□□□□□ -0.49
LIME1-209ENST00000494776 TIGITQ495A1 244 aa12□□□□□ -0.49
LIME1-209ENST00000494776 TOMM20LQ6UXN7 152 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms