RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CHRNB4P30926 498 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 RHOBP62745 196 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 RPEL1Q2QD12 228 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 C19orf35Q6ZS72 473 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 SLC25A48Q6ZT89 311 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 SSBP4Q9BWG4 385 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 FOXA2Q9Y261 457 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 TBL2Q9Y4P3 447 aaKnown RBP13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 AKAP6Q13023 2319 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 C3orf36Q3SXR2 165 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 TPTE2P1Q5T6R2 138 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 SIGLECL1Q8N7X8 197 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 LSM4Q9Y4Z0 139 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 E7EUB6 86 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 ZNF253O75346 499 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 FOSL1P15407 271 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 MMDQ15546 238 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 SPTBN4Q9H254 2564 aa13.42□□□□□ -0.26
CCDC88B-210ENST00000494566 TRGV8A0A0C4DH27 118 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 A0A1W2PN81 502 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 hADV38S2A0JD32 116 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 TMEM200BQ69YZ2 307 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 ASCL5Q7RTU5 278 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 BEND2Q8NDZ0 799 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 NUP37Q8NFH4 326 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 WNK2Q9Y3S1 2297 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 COL6A6A6NMZ7 2263 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 GGTLC3B5MD39 225 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 CAMPP49913 170 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 TEX36Q5VZQ5 186 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 ASCL2Q99929 193 aa13.41□□□□□ -0.26
CCDC88B-210ENST00000494566 TEX50A0A1B0GTY4 177 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 FAM87AP0C7U9 286 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 TNFRSF1AP19438 455 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 TMEM208Q9BTX3 173 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 V9GYV3 84 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 MALRD1Q5VYJ5 2156 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 ANKHD1Q8IWZ3 2542 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 NKX6-3A6NJ46 265 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 DIRC3C9JPN6 131 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 LYNX1G3V0Z9 82 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 M0QZ24 198 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 MPDU1O75352 247 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 LYNX1P0DP58 116 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 DNLZQ5SXM8 178 aa13.4□□□□□ -0.26
CCDC88B-210ENST00000494566 UPK2O00526 184 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 PMCHL1Q16048 86 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 RTL8BQ17RB0 113 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 ZNF503Q96F45 646 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 HARBI1Q96MB7 349 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 CTSZQ9UBR2 303 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 LINC00312Q9Y6C7 94 aa13.4□□□□□ -0.27
CCDC88B-210ENST00000494566 COL12A1Q99715 3063 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 PPIAL4EA0A075B759 164 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 IGHV3-72A0A0B4J1Y9 119 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 PPIAL4DF5H284 164 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 PPIAL4FP0DN26 164 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 TMPRSS3P57727 454 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 GNG5P63218 68 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 SPACA3Q8IXA5 215 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 BLNKQ8WV28 456 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 ZNF714Q96N38 554 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 ZNF355PQ9NSJ1 428 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 ITGB1BP1O14713 200 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 RAB4AP20338 218 aa13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 SPTBN1Q01082 2364 aaKnown RBP13.39□□□□□ -0.27
CCDC88B-210ENST00000494566 HRNRQ86YZ3 2850 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 KIR2DL5BA0A0G2JN68 375 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 KIR2DL5BA0A0G2JPC4 375 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 TMEM178BH3BS89 294 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 LINC00869P0C866 280 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 KIR2DL5AQ8N109 375 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 RAB1CQ92928 201 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 ST6GALNAC6Q969X2 333 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 RAB9BQ9NP90 201 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 ARHGAP32A7KAX9 2087 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 RAB31Q13636 194 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 CORO2AQ92828 525 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 ADTRPQ96IZ2 230 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 NRN1Q9NPD7 142 aa13.38□□□□□ -0.27
CCDC88B-210ENST00000494566 H0Y8G0 127 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 CORTO00230 105 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 PRCDQ00LT1 54 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 DMRTA1Q5VZB9 504 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 OR10X1Q8NGY0 326 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 RITA1Q96K30 269 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 MCRIP2Q9BUT9 160 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 SCNM1Q9BWG6 230 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 DYNLRB1Q9NP97 96 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 PRNDQ9UKY0 176 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 MAP1AP78559 2803 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 SH2D7A6NKC9 451 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 RPLP1P05386 114 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 CD99P14209 185 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 YPEL3P61236 119 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 TIGITQ495A1 244 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 SPATA45Q537H7 98 aa13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 IBA57Q5T440 356 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-210ENST00000494566 NCOR1P1Q9H4R4 102 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms