RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 CDC42P60953 191 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 RAB4BP61018 213 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 PDE6HQ13956 83 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 DCUN1D1Q96GG9 259 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 TSPAN32Q96QS1 320 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 PARD6GQ9BYG4 376 aaPredicted RBP0.6□□□□□ -2.31
SCN1A-206ENST00000491429 OSTCQ9NRP0 149 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 ACER3Q9NUN7 267 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 TAS2R4Q9NYW5 299 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 MRPL27Q9P0M9 148 aaKnown RBP0.6□□□□□ -2.31
SCN1A-206ENST00000491429 VPS29Q9UBQ0 182 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 RIC1Q4ADV7 1423 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 ROS1P08922 2347 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 SNAPC4Q5SXM2 1469 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 LOC110117498A0A087WWA1 95 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 TRBV6-8A0A0A6YYG3 113 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 FAM236DA0A1B0GTK5 79 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 CLDN24A6NM45 220 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 C19orf84I3L1E1 186 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 PIRO00625 290 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 SULT1B1O43704 296 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 TCL1BO95988 128 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 FAM236CP0DP71 79 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 MIFP14174 115 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 CLDN22Q8N7P3 220 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 Q8N814 137 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 C8orf76Q96K31 380 aa0.59□□□□□ -2.31
SCN1A-206ENST00000491429 TRAV26-2A0A0B4J265 109 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 OR2J2O76002 312 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 LYPLA2O95372 231 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 BAALC-AS2P0C853 105 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 S100A4P26447 101 aaKnown RBP0.58□□□□□ -2.32
SCN1A-206ENST00000491429 RHOGP84095 191 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 TRAPPC6BQ86SZ2 158 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 KRT222Q8N1A0 295 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 ZNF418Q8TF45 676 aaPredicted RBP0.58□□□□□ -2.32
SCN1A-206ENST00000491429 SFT2D1Q8WV19 159 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 GPR146Q96CH1 333 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 CCDC42Q96M95 316 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 CCDC90BQ9GZT6 254 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 MIXL1Q9H2W2 232 aa0.58□□□□□ -2.32
SCN1A-206ENST00000491429 NUP155O75694 1391 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 SMIM23A6NLE4 172 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 NIPSNAP2O75323 286 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 LYZL6O75951 148 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 OR2B3O76000 313 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 RPS17P08708 135 aaKnown RBP0.57□□□□□ -2.32
SCN1A-206ENST00000491429 SMIM10L2AP0DMW4 78 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 SMIM10L2BP0DMW5 78 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 CNBPP62633 177 aaKnown RBP0.57□□□□□ -2.32
SCN1A-206ENST00000491429 IMPG1Q17R60 797 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 PTRHD1Q6GMV3 140 aaKnown RBP0.57□□□□□ -2.32
SCN1A-206ENST00000491429 TRAPPC5Q8IUR0 188 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 OR13D1Q8NGV5 346 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 LINC00526Q96FQ7 95 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 SLC35A3Q9Y2D2 325 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 HECW2Q9P2P5 1572 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 ADCY9O60503 1353 aa0.57□□□□□ -2.32
SCN1A-206ENST00000491429 HECW1Q76N89 1606 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 COL4A5P29400 1685 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 ALPK2Q86TB3 2170 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 MICAL3Q7RTP6 2002 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 TRAV12-1A0A0B4J245 112 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 C1orf196B1AJZ1 125 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 GOLGA6L19H0YKK7 550 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 PROSCO94903 275 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 CNIH1O95406 144 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 TTRP02766 147 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 SERPINA6P08185 405 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 RBP1P09455 135 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 DEFA3P59666 94 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 ITGB3BPQ13352 177 aaPredicted RBP0.56□□□□□ -2.32
SCN1A-206ENST00000491429 DEFB113Q30KQ7 82 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 LINC01554Q52M75 96 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 GDF5OSQ5U4N7 250 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 TEX261Q6UWH6 196 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 CLECL1Q8IZS7 167 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 C20orf27Q9GZN8 174 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 OR51V1Q9H2C8 321 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 CDC42SE1Q9NRR8 79 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 U3KQ87 197 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 RP1P56715 2156 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 ROBO3Q96MS0 1386 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 ANAPC1Q9H1A4 1944 aa0.56□□□□□ -2.32
SCN1A-206ENST00000491429 KIF13BQ9NQT8 1826 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 CCDC160A6NGH7 325 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 OR4E1P0C645 316 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 SMIM17P0DL12 118 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 ZNF25P17030 456 aaPredicted RBP0.55□□□□□ -2.32
SCN1A-206ENST00000491429 CASP1P29466 404 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 OMPP47874 163 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 OR10J5Q8NHC4 309 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 ARL5BQ96KC2 179 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 CMSS1Q9BQ75 279 aaKnown RBP0.55□□□□□ -2.32
SCN1A-206ENST00000491429 DCSTAMPQ9H295 470 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 C14orf105Q9NVL8 296 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 RASL12Q9NYN1 266 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 CYSLTR1Q9Y271 337 aa0.55□□□□□ -2.32
SCN1A-206ENST00000491429 UTP11Q9Y3A2 253 aaKnown RBP0.55□□□□□ -2.32
SCN1A-206ENST00000491429 V9GYY5 206 aaPredicted RBP0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms