RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 GNG7O60262 68 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 YIF1AO95070 293 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 TMEM50AO95807 157 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 RBMY1DP0C7P1 496 aaKnown RBP13.56□□□□□ -0.24
COL9A3-214ENST00000490398 SULT1A3P0DMM9 295 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 SULT1A4P0DMN0 295 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 PPP1R1AQ13522 171 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 TOMM20LQ6UXN7 152 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 TUBA4BQ9H853 241 aa13.56□□□□□ -0.24
COL9A3-214ENST00000490398 IGHV3OR16-13A0A075B7E8 117 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 IGHV3-74A0A0B4J1X5 117 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 A0A1B0GU03 582 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 CEBPZOSA8MTT3 80 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 OR11H12B2RN74 326 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 K7EMT4 169 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 LGI3Q8N145 548 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 DUSP18Q8NEJ0 188 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 OR10C1Q96KK4 312 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 SLC25A21Q9BQT8 299 aaPredicted RBP13.55□□□□□ -0.24
COL9A3-214ENST00000490398 SRD5A3Q9H8P0 318 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 RETNQ9HD89 108 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 GAR1Q9NY12 217 aaKnown RBP13.55□□□□□ -0.24
COL9A3-214ENST00000490398 SMPXQ9UHP9 88 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 FLVCR2Q9UPI3 526 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 LYSTQ99698 3801 aa13.55□□□□□ -0.24
COL9A3-214ENST00000490398 IGHV7-4-1A0A0J9YVY3 117 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 C15orf62A8K5M9 175 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 APOHP02749 345 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-214ENST00000490398 VAMP1P23763 118 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 BTCP35070 178 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 OPRK1P41145 380 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 NPBWR1P48145 328 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 SUB1P53999 127 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL9A3-214ENST00000490398 RELQ04864 619 aaPredicted RBP13.54□□□□□ -0.24
COL9A3-214ENST00000490398 SMCO1Q147U7 214 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 TMEM128Q5BJH2 165 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 TRIQKQ629K1 86 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 RBPMS2Q6ZRY4 209 aaKnown RBP13.54□□□□□ -0.24
COL9A3-214ENST00000490398 LILRB2Q8N423 598 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 OR52B4Q8NGK2 314 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 CITED4Q96RK1 184 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 RNF2Q99496 336 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 RBKSQ9H477 322 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 ZFAND3Q9H8U3 227 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 NDUFA13Q9P0J0 144 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 HSPB7Q9UBY9 170 aa13.54□□□□□ -0.24
COL9A3-214ENST00000490398 TRAV25A0A0B4J276 109 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 CHEK1O14757 476 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 SFT2D2O95562 160 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 ANXA3P12429 323 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 IL7P13232 177 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 HTR2BP41595 481 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 TNFRSF9Q07011 255 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 C2orf83Q53S99 150 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 SLC24A4Q8NFF2 622 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 DEDD2Q8WXF8 326 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 RHPN1-AS1Q9BWJ2 59 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 UBQLN2Q9UHD9 624 aa13.53□□□□□ -0.24
COL9A3-214ENST00000490398 PUS1Q9Y606 427 aaKnown RBP eCLIP13.53□□□□□ -0.24
COL9A3-214ENST00000490398 CORTO00230 105 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 TSPAN4O14817 238 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 PITX3O75364 302 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 CLN5O75503 358 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 IGKV1-17P01599 117 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 TIGITQ495A1 244 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 CENPSQ8N2Z9 138 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 LRTM2Q8N967 370 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 OR4X1Q8NH49 305 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 ZMAT4Q9H898 229 aa13.52□□□□□ -0.25
COL9A3-214ENST00000490398 IGHV3-66A0A0C4DH42 116 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 NDUFB6O95139 128 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 INPP1P49441 399 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 SRPXP78539 464 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 RBMS2Q15434 407 aaKnown RBP13.51□□□□□ -0.25
COL9A3-214ENST00000490398 PRSS54Q6PEW0 395 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 ZNF600Q6ZNG1 722 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 SLC16A13Q7RTY0 426 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 TMEM116Q8NCL8 245 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 DTD1Q8TEA8 209 aa13.51□□□□□ -0.25
COL9A3-214ENST00000490398 TRAV14DV4A0A0A6YYC5 116 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 PLA2G10O15496 165 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 HOXB5P09067 269 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 NPY1RP25929 384 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 ODF3L2Q3SX64 289 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 FAM90A2PQ658T7 463 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 OR1S1Q8NH92 325 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 ST8SIA2Q92186 375 aa13.5□□□□□ -0.25
COL9A3-214ENST00000490398 SPAG8Q99932 426 aaPredicted RBP13.5□□□□□ -0.25
COL9A3-214ENST00000490398 IGKV3-7A0A075B6H7 116 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 C9orf170A2RU37 121 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 NAP1L6A6NFF2 107 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 IAPPP10997 89 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 RND2P52198 227 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 RNASEH2CQ8TDP1 164 aaKnown RBP13.49□□□□□ -0.25
COL9A3-214ENST00000490398 FAM110AQ9BQ89 295 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 HIPK2Q9H2X6 1198 aa13.49□□□□□ -0.25
COL9A3-214ENST00000490398 DUXBA0A1W2PPF3 345 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 MPTX1A8MV57 137 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 ADAP1O75689 374 aa13.48□□□□□ -0.25
COL9A3-214ENST00000490398 IFNA10P01566 189 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms