RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PYCR3Q53H96 274 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TMEM78Q5T7P6 136 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 HENMT1Q5T8I9 393 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 N4BP2L1Q5TBK1 243 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 SAMD13Q5VXD3 122 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TRIQKQ629K1 86 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM45BPQ6NSW5 357 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SFXN4Q6P4A7 337 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CD200R1LQ6Q8B3 271 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TEX261Q6UWH6 196 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM183BPQ6ZVS7 135 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 AHSA2Q719I0 299 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OLIG3Q7RTU3 272 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SLC36A1Q7Z2H8 476 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 GLT6D1Q7Z4J2 308 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FAM19A3Q7Z5A8 133 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 ARPINQ7Z6K5 226 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MRPL52Q86TS9 123 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 ZBTB8OSQ8IWT0 167 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TCTE3Q8IZS6 198 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 C12orf45Q8N5I9 185 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 SPICQ8N5J4 248 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TMEM86BQ8N661 226 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TMEM251Q8N6I4 163 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 KRTCAP2Q8N6L1 136 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PACRGLQ8N7B6 248 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 GDPD1Q8N9F7 314 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FER1L6-AS1Q8NA97 138 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR52L1Q8NGH7 329 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR5L1Q8NGL2 311 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR8D4Q8NGM9 314 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR5J2Q8NH18 312 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 OR5K1Q8NHB7 308 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MFSD8Q8NHS3 518 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SPPL2BQ8TCT7 592 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CASTOR1Q8WTX7 329 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TMEM239Q8WW34 195 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CYGBQ8WWM9 190 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SLC7A6Q92536 515 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 GALMQ96C23 342 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 C12orf43Q96C57 262 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 GPR146Q96CH1 333 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CMBLQ96DG6 245 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 ZMYND19Q96E35 227 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 MRPS24Q96EL2 167 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 SMIM12Q96EX1 92 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PPP3R2Q96LZ3 170 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RBP7Q96R05 134 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SERPINI1Q99574 410 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TBX5Q99593 518 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TCEAL7Q9BRU2 100 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MND1Q9BWT6 205 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MRPS26Q9BYN8 205 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 CCDC90BQ9GZT6 254 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PRO1933Q9H354 126 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 MFSD1Q9H3U5 465 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 FBXL15Q9H469 300 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CST9LQ9H4G1 147 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 METTL17Q9H7H0 456 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 ZNF286AQ9HBT8 521 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TMEM138Q9NPI0 162 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 FGFR1OP2Q9NVK5 253 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 COPZ2Q9P299 210 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RSL24D1Q9UHA3 163 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 RPUSD1Q9UJJ7 312 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 HHLA2Q9UM44 414 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TNFSF18Q9UNG2 199 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SSR3Q9UNL2 185 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 POMPQ9Y244 141 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 ZFP30Q9Y2G7 519 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 RNF11Q9Y3C5 154 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 UFC1Q9Y3C8 167 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 POLR3HQ9Y535 204 aaPredicted RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 ARL5AQ9Y689 179 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 U3KQ87 197 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 LOC285556D6RIA3 1793 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 COL18A1P39060 1754 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PAPPA2Q9BXP8 1791 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 COL4A2P08572 1712 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TOGARAM1Q9Y4F4 1720 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 ALS2Q96Q42 1657 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 SNRNP200O75643 2136 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 EIF2AK4Q9P2K8 1649 aaKnown RBP0.74□□□□□ -2.29
SMC4-220ENST00000488017 ABCC8Q09428 1581 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 TIAM1Q13009 1591 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 NFAT5O94916 1531 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 ABCC1P33527 1531 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 KIAA0586Q9BVV6 1533 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PTPRSQ13332 1948 aa0.74□□□□□ -2.29
SMC4-220ENST00000488017 PLEKHH2Q8IVE3 1493 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 UBR3Q6ZT12 1888 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 ABCC5O15440 1437 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 CRB1P82279 1406 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 HELZ2Q9BYK8 2649 aaKnown RBP0.73□□□□□ -2.29
SMC4-220ENST00000488017 C4AP0C0L4 1744 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 C4BP0C0L5 1744 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 NCOA6Q14686 2063 aaPredicted RBP0.73□□□□□ -2.29
SMC4-220ENST00000488017 LMO7Q8WWI1 1683 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 SCN3AQ9NY46 2000 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms