RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TMEM56-RWDD3S4R434 201 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 MYH11P35749 1972 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 DPRXA6NFQ7 191 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 CLDN24A6NM45 220 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 M0R036 132 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 PSMD12O00232 456 aaPredicted RBP0.28□□□□□ -2.36
VPS50-216ENST00000484954 OR1I1O60431 355 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 LYZL6O75951 148 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 UBL3O95164 117 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 CD79AP11912 226 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 COX6A1P12074 109 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 SSR2P43308 183 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 SULT1A1P50225 295 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 LSM6P62312 80 aaKnown RBP0.28□□□□□ -2.36
VPS50-216ENST00000484954 RHEBQ15382 184 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 IAH1Q2TAA2 248 aaPredicted RBP0.28□□□□□ -2.36
VPS50-216ENST00000484954 DEFB113Q30KQ7 82 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 DPPA3Q6W0C5 159 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 KRTAP19-3Q7Z4W3 81 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 CLDN22Q8N7P3 220 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 OR13D1Q8NGV5 346 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 OR4C6Q8NH72 309 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 MCFD2Q8NI22 146 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 ADAT3Q96EY9 351 aaPredicted RBP0.28□□□□□ -2.36
VPS50-216ENST00000484954 MIXL1Q9H2W2 232 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 NUP155O75694 1391 aa0.28□□□□□ -2.36
VPS50-216ENST00000484954 UNC79Q9P2D8 2635 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TRAV9-1A0A075B6T8 112 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 A0A087WX48 190 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TRAV12-1A0A0B4J245 112 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TRAV1-1A0A0B4J248 108 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 PQLC2LA1A4F0 135 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 SMIM9A6NGZ8 99 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 GOLGA6L19H0YKK7 550 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 LYPLA2O95372 231 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 ZNF682O95780 498 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TCL1BO95988 128 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TCRBP04435 133 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 BRS3P32247 399 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 AESQ08117 197 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 ITGB3BPQ13352 177 aaPredicted RBP0.27□□□□□ -2.37
VPS50-216ENST00000484954 RNASE10Q5GAN6 216 aaKnown RBP0.27□□□□□ -2.37
VPS50-216ENST00000484954 PTRHD1Q6GMV3 140 aaKnown RBP0.27□□□□□ -2.37
VPS50-216ENST00000484954 PHF13Q86YI8 300 aaPredicted RBP0.27□□□□□ -2.37
VPS50-216ENST00000484954 SIGLECL1Q8N7X8 197 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 C3orf56Q8N813 242 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 Q8N814 137 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 OR4E2Q8NGC2 313 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 WFDC5Q8TCV5 224 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 ZNF418Q8TF45 676 aaPredicted RBP0.27□□□□□ -2.37
VPS50-216ENST00000484954 DNAJC9Q8WXX5 260 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 LINC00526Q96FQ7 95 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TMEM147Q9BVK8 224 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 ULBP3Q9BZM4 244 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 COMMD5Q9GZQ3 224 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 PARVGQ9HBI0 331 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 UQCC1Q9NVA1 299 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 C14orf105Q9NVL8 296 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 CYSLTR1Q9Y271 337 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 COL4A5P29400 1685 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 RALGAPA2Q2PPJ7 1873 aa0.27□□□□□ -2.37
VPS50-216ENST00000484954 TTC28Q96AY4 2481 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 ANKRD17O75179 2603 aaKnown RBP0.26□□□□□ -2.37
VPS50-216ENST00000484954 TRBV6-7A0A0A0MS04 114 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 INE1O15225 51 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 IFNA10P01566 189 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 BAALC-AS2P0C853 105 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 MYL6P60660 151 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 C12orf74Q32Q52 190 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 KRTAP21-1Q3LI58 79 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 KHDC3LQ587J8 217 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 C1orf137Q5JT78 98 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 OOSP2Q86WS3 158 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 Q8IYB0 196 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 HIST3H2BBQ8N257 126 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 LINC00471Q8N535 108 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 OR10J5Q8NHC4 309 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 DCUN1D1Q96GG9 259 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 PRAP1Q96NZ9 151 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 GINS4Q9BRT9 223 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 TMEM133Q9H2Q1 129 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 OSTCQ9NRP0 149 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.26□□□□□ -2.37
VPS50-216ENST00000484954 SLC39A9Q9NUM3 307 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 ACER3Q9NUN7 267 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 TAS2R4Q9NYW5 299 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 UBAP1Q9NZ09 502 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 IDI2-AS1Q9NZ38 188 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 ERGIC3Q9Y282 383 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 PRELID3BQ9Y3B1 194 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 ADGRB2O60241 1585 aa0.26□□□□□ -2.37
VPS50-216ENST00000484954 EXPH5Q8NEV8 1989 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 MAST2Q6P0Q8 1798 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 STRCQ7RTU9 1775 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 HECW2Q9P2P5 1572 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 SNAPC4Q5SXM2 1469 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 PLB1Q6P1J6 1458 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 NEO1Q92859 1461 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 TRBV6-8A0A0A6YYG3 113 aa0.25□□□□□ -2.37
VPS50-216ENST00000484954 TRAV3A0A0B4J244 114 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms