RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NHLRC2Q8NBF2 726 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 LRRC29Q8WV35 223 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 MBD6Q96DN6 1003 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 ST20Q9HBF5 79 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 ZNF355PQ9NSJ1 428 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 IDI2-AS1Q9NZ38 188 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 PRNDQ9UKY0 176 aa10.87□□□□□ -0.67
USP40-214ENST00000483519 MGST3O14880 152 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 MEOX1P50221 254 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 UBE2L3P68036 154 aaKnown RBP10.86□□□□□ -0.67
USP40-214ENST00000483519 FOXC1Q12948 553 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 RNF151Q2KHN1 245 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 CR1LQ2VPA4 569 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 NUP35Q8NFH5 326 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 ZNF596Q8TC21 504 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 FAM168AQ92567 244 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 SLC25A33Q9BSK2 321 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 CLCF1Q9UBD9 225 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 DUSP13Q9UII6 198 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 DNAJC13O75165 2243 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 IGHV3-13P01766 116 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 IGHV3-7P01780 117 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 PPBPP02775 128 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 IGHV1-2P23083 117 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 ATP5IP56385 69 aaPredicted RBP10.86□□□□□ -0.67
USP40-214ENST00000483519 RPL8P62917 257 aaKnown RBP10.86□□□□□ -0.67
USP40-214ENST00000483519 ARG2P78540 354 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 LINC00696Q6ZRV3 163 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 ATP5L2Q7Z4Y8 100 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.86□□□□□ -0.67
USP40-214ENST00000483519 KLF13Q9Y2Y9 288 aaPredicted RBP10.86□□□□□ -0.67
USP40-214ENST00000483519 J3QR06 171 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 LYZL6O75951 148 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 MZT1Q08AG7 82 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 ADTRPQ96IZ2 230 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 ZNF257Q9Y2Q1 563 aa10.86□□□□□ -0.67
USP40-214ENST00000483519 AMMECR1Q9Y4X0 333 aaPredicted RBP10.86□□□□□ -0.67
USP40-214ENST00000483519 IGKV1OR2-108A0A075B7D4 117 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 HIST1H1EP10412 219 aaKnown RBP10.85□□□□□ -0.67
USP40-214ENST00000483519 GATA2P23769 480 aaPredicted RBP10.85□□□□□ -0.67
USP40-214ENST00000483519 RHOGP84095 191 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 PRCDQ00LT1 54 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 SNRNP40Q96DI7 357 aaKnown RBP10.85□□□□□ -0.67
USP40-214ENST00000483519 SPXQ9BT56 116 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 RAB9BQ9NP90 201 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 OR4C46A6NHA9 309 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 C21orf140B9A014 251 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 KLRC4-KLRK1H3BQV0 150 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 POU2AF1Q16633 256 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 GDF5OSQ5U4N7 250 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 C1RLQ9NZP8 487 aa10.85□□□□□ -0.67
USP40-214ENST00000483519 CRXO43186 299 aaPredicted RBP10.84□□□□□ -0.67
USP40-214ENST00000483519 NUDT10Q8NFP7 164 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 NUDT11Q96G61 164 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 CALYQ9NYX4 217 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 SAA2P0DJI9 122 aaPredicted RBP10.84□□□□□ -0.67
USP40-214ENST00000483519 C2orf83Q53S99 150 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 SMIM15Q7Z3B0 74 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 MOB3BQ86TA1 216 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 SLC25A2Q9BXI2 301 aa10.84□□□□□ -0.67
USP40-214ENST00000483519 IGKV1D-17A0A075B6S4 117 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 HIGD1CA8MV81 97 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 PEX7O00628 323 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 GPR6P46095 362 aaPredicted RBP10.83□□□□□ -0.68
USP40-214ENST00000483519 CAMPP49913 170 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 MPV17L2Q567V2 206 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 LINC00479Q96M42 142 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 SSBP4Q9BWG4 385 aaPredicted RBP10.83□□□□□ -0.68
USP40-214ENST00000483519 CLEC5AQ9NY25 188 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 TOX4O94842 621 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 MYOD1P15172 320 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 ETFRF1Q6IPR1 90 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 C1orf229Q6ZS94 237 aaPredicted RBP10.83□□□□□ -0.68
USP40-214ENST00000483519 OR9G1Q8NH87 305 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 FAM167A-AS1Q96KT0 104 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 DEFB127Q9H1M4 99 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 FZR1Q9UM11 496 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 WASHC3Q9Y3C0 194 aa10.83□□□□□ -0.68
USP40-214ENST00000483519 SRRM5B3KS81 715 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 REG1BP48304 166 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 FABP6P51161 128 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 SLC25A34Q6PIV7 304 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 C12orf54Q6X4T0 127 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 OR1L8Q8NGR8 309 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 OR2T6Q8NHC8 308 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 CHCHD1Q96BP2 118 aaKnown RBP10.82□□□□□ -0.68
USP40-214ENST00000483519 SCNM1Q9BWG6 230 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 TRGV5A0A0B4J1U4 118 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 A0A1B0GXF2 115 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 UPK2O00526 184 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 IGKV3-15P01624 115 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 CA7P43166 264 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 CT45A1Q5HYN5 189 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 PRR27Q6MZM9 219 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 SPATA12Q7Z6I5 190 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 GCSAMQ8N6F7 178 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 KIR3DL3Q8N743 410 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 CT45A3Q8NHU0 189 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 LEAP2Q969E1 77 aa10.82□□□□□ -0.68
USP40-214ENST00000483519 ZNF714Q96N38 554 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms