RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 FAUP35544 74 aaKnown RBP16.23■□□□□ 0.19
COL9A3-211ENST00000477612 AP3S2P59780 193 aa16.23■□□□□ 0.19
COL9A3-211ENST00000477612 PYDC2Q56P42 97 aa16.23■□□□□ 0.19
COL9A3-211ENST00000477612 FAM110AQ9BQ89 295 aa16.23■□□□□ 0.19
COL9A3-211ENST00000477612 FNDC4Q9H6D8 234 aaPredicted RBP16.23■□□□□ 0.19
COL9A3-211ENST00000477612 RYR3Q15413 4870 aa16.23■□□□□ 0.19
COL9A3-211ENST00000477612 IGHV3OR16-8A0A075B7F1 116 aa16.22■□□□□ 0.19
COL9A3-211ENST00000477612 CHEK1O14757 476 aa16.22■□□□□ 0.19
COL9A3-211ENST00000477612 ZNF207O43670 478 aaKnown RBP16.22■□□□□ 0.19
COL9A3-211ENST00000477612 HTR2BP41595 481 aa16.22■□□□□ 0.19
COL9A3-211ENST00000477612 TOMM5Q8N4H5 51 aa16.22■□□□□ 0.19
COL9A3-211ENST00000477612 TRAV14DV4A0A0A6YYC5 116 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 A0A0B4J2A0 478 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 C2orf83Q53S99 150 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 CASC10Q5T4H9 136 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 TOMM20LQ6UXN7 152 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 ZNF600Q6ZNG1 722 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 TMEM116Q8NCL8 245 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 OR4X1Q8NH49 305 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 RHPN1-AS1Q9BWJ2 59 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 SHPKQ9UHJ6 478 aa16.21■□□□□ 0.19
COL9A3-211ENST00000477612 CLN5O75503 358 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 YIF1AO95070 293 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 SULT1A3P0DMM9 295 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 SULT1A4P0DMN0 295 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 AKR1C4P17516 323 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 MLANAQ16655 118 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 NMSQ5H8A3 153 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 FAM90A2PQ658T7 463 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 RNF2Q99496 336 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 GINS3Q9BRX5 216 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 ZFAND3Q9H8U3 227 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 MRPL36Q9P0J6 103 aaKnown RBP16.2■□□□□ 0.18
COL9A3-211ENST00000477612 STARD9Q9P2P6 4700 aa16.2■□□□□ 0.18
COL9A3-211ENST00000477612 LOC102724200A0A096LPH7 203 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-211ENST00000477612 ANXA3P12429 323 aa16.19■□□□□ 0.18
COL9A3-211ENST00000477612 OPRK1P41145 380 aa16.19■□□□□ 0.18
COL9A3-211ENST00000477612 TMEM128Q5BJH2 165 aa16.19■□□□□ 0.18
COL9A3-211ENST00000477612 SLC25A21Q9BQT8 299 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-211ENST00000477612 HEYLQ9NQ87 328 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-211ENST00000477612 PRR13Q9NZ81 148 aa16.19■□□□□ 0.18
COL9A3-211ENST00000477612 PIGBOS1A0A0B4J2F0 54 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 OR4C46A6NHA9 309 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 CCR6P51684 374 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 SRPXP78539 464 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 LYZL2Q7Z4W2 148 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 LGI3Q8N145 548 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 RNASEH2CQ8TDP1 164 aaKnown RBP16.18■□□□□ 0.18
COL9A3-211ENST00000477612 GGTLC1Q9BX51 225 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 VSIRQ9H7M9 311 aa16.18■□□□□ 0.18
COL9A3-211ENST00000477612 PUS1Q9Y606 427 aaKnown RBP eCLIP16.18■□□□□ 0.18
COL9A3-211ENST00000477612 DUXBA0A1W2PPF3 345 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 CD5P06127 495 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 ODF3L2Q3SX64 289 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 SLC24A4Q8NFF2 622 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 TMEM170AQ8WVE7 144 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 SRRQ9GZT4 340 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 RETNQ9HD89 108 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 HSPB7Q9UBY9 170 aa16.17■□□□□ 0.18
COL9A3-211ENST00000477612 TRAV30A0A087WSZ9 112 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 A0A1B0GU03 582 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 RPS10-NUDT3A0A1W2PQS6 291 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 CEBPZOSA8MTT3 80 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 LYL1P12980 280 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 TNFRSF9Q07011 255 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 SMCO1Q147U7 214 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 SPANXN2Q5MJ10 180 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 LRTM2Q8N967 370 aa16.16■□□□□ 0.18
COL9A3-211ENST00000477612 SLC25A4P12235 298 aa16.15■□□□□ 0.18
COL9A3-211ENST00000477612 BMI1P35226 326 aa16.15■□□□□ 0.18
COL9A3-211ENST00000477612 NOXA1Q86UR1 476 aa16.15■□□□□ 0.18
COL9A3-211ENST00000477612 IGHV3-49A0A0A0MS15 119 aa16.14■□□□□ 0.17
COL9A3-211ENST00000477612 SCGB2A1O75556 95 aa16.14■□□□□ 0.17
COL9A3-211ENST00000477612 IGKV1-17P01599 117 aa16.14■□□□□ 0.17
COL9A3-211ENST00000477612 CMC4P56277 68 aaPredicted RBP16.14■□□□□ 0.17
COL9A3-211ENST00000477612 PRSS54Q6PEW0 395 aa16.14■□□□□ 0.17
COL9A3-211ENST00000477612 UBQLN2Q9UHD9 624 aa16.14■□□□□ 0.17
COL9A3-211ENST00000477612 U3KQ87 197 aa16.14■□□□□ 0.17
COL9A3-211ENST00000477612 DYNC2H1Q8NCM8 4307 aaKnown RBP16.14■□□□□ 0.17
COL9A3-211ENST00000477612 PITX3O75364 302 aa16.13■□□□□ 0.17
COL9A3-211ENST00000477612 APOHP02749 345 aaPredicted RBP16.13■□□□□ 0.17
COL9A3-211ENST00000477612 NPY1RP25929 384 aa16.13■□□□□ 0.17
COL9A3-211ENST00000477612 TMED4Q7Z7H5 227 aa16.13■□□□□ 0.17
COL9A3-211ENST00000477612 LILRB2Q8N423 598 aa16.13■□□□□ 0.17
COL9A3-211ENST00000477612 ST8SIA2Q92186 375 aa16.13■□□□□ 0.17
COL9A3-211ENST00000477612 IGLC1P0CG04 106 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 SLC25A6P12236 298 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 CRYBB3P26998 211 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 ATP5IP56385 69 aaPredicted RBP16.12■□□□□ 0.17
COL9A3-211ENST00000477612 ETFRF1Q6IPR1 90 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 TCF24Q7RTU0 167 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 OR1S2Q8NGQ3 325 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 DTD1Q8TEA8 209 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 RBKSQ9H477 322 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 LYSTQ99698 3801 aa16.12■□□□□ 0.17
COL9A3-211ENST00000477612 IGHV3OR16-13A0A075B7E8 117 aa16.11■□□□□ 0.17
COL9A3-211ENST00000477612 IGHV3-74A0A0B4J1X5 117 aa16.11■□□□□ 0.17
COL9A3-211ENST00000477612 TRAV2A0A0B4J234 112 aa16.11■□□□□ 0.17
COL9A3-211ENST00000477612 KIR2DL5BA0A0G2JN68 375 aa16.11■□□□□ 0.17
COL9A3-211ENST00000477612 KIR2DL5BA0A0G2JPC4 375 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms