RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 HTR2BP41595 481 aa11.77□□□□□ -0.53
HDAC6-218ENST00000470942 TRIQKQ629K1 86 aa11.77□□□□□ -0.53
HDAC6-218ENST00000470942 PVRIGQ6DKI7 326 aa11.77□□□□□ -0.53
HDAC6-218ENST00000470942 DEDD2Q8WXF8 326 aa11.77□□□□□ -0.53
HDAC6-218ENST00000470942 SLC25A21Q9BQT8 299 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-218ENST00000470942 SPATA25Q9BR10 227 aa11.77□□□□□ -0.53
HDAC6-218ENST00000470942 SHPKQ9UHJ6 478 aa11.77□□□□□ -0.53
HDAC6-218ENST00000470942 IGHV3-49A0A0A0MS15 119 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 TMEM50AO95807 157 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 VAMP1P23763 118 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 CCR6P51684 374 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 MLANAQ16655 118 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 BSXQ3C1V8 233 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 TMEM128Q5BJH2 165 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 TMEM116Q8NCL8 245 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 ZNF414Q96IQ9 312 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 HIPK2Q9H2X6 1198 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 FNDC4Q9H6D8 234 aaPredicted RBP11.76□□□□□ -0.53
HDAC6-218ENST00000470942 NDUFA13Q9P0J0 144 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 CACFD1Q9UGQ2 172 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 SMPXQ9UHP9 88 aa11.76□□□□□ -0.53
HDAC6-218ENST00000470942 TRAV14DV4A0A0A6YYC5 116 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 IGHV7-4-1A0A0J9YVY3 117 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 TSPAN4O14817 238 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 SMCO1Q147U7 214 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 BAK1Q16611 211 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 NMSQ5H8A3 153 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 TOMM20LQ6UXN7 152 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 ZNF600Q6ZNG1 722 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 SLC24A4Q8NFF2 622 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 OR1S1Q8NH92 325 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 OR10C1Q96KK4 312 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 SPAG8Q99932 426 aaPredicted RBP11.75□□□□□ -0.53
HDAC6-218ENST00000470942 GINS3Q9BRX5 216 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 RHPN1-AS1Q9BWJ2 59 aa11.75□□□□□ -0.53
HDAC6-218ENST00000470942 MRPL36Q9P0J6 103 aaKnown RBP11.75□□□□□ -0.53
HDAC6-218ENST00000470942 IGHV3OR16-13A0A075B7E8 117 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 IGHV3-74A0A0B4J1X5 117 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 PIGBOS1A0A0B4J2F0 54 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 LINC00854A0A1B0GVQ3 168 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 RPS10-NUDT3A0A1W2PQS6 291 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 RBMY1BA6NDE4 496 aaKnown RBP11.74□□□□□ -0.53
HDAC6-218ENST00000470942 RBMY1EA6NEQ0 496 aaKnown RBP11.74□□□□□ -0.53
HDAC6-218ENST00000470942 CHEK1O14757 476 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 CLN5O75503 358 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 SCGB2A1O75556 95 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 RBMY1DP0C7P1 496 aaKnown RBP11.74□□□□□ -0.53
HDAC6-218ENST00000470942 C2orf83Q53S99 150 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 LINC00322Q6ZN03 302 aaPredicted RBP11.74□□□□□ -0.53
HDAC6-218ENST00000470942 RNF2Q99496 336 aa11.74□□□□□ -0.53
HDAC6-218ENST00000470942 PUS1Q9Y606 427 aaKnown RBP eCLIP11.74□□□□□ -0.53
HDAC6-218ENST00000470942 A0A1B0GU03 582 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 NAP1L6A6NFF2 107 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 IFNA10P01566 189 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 NPY1RP25929 384 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 TNFRSF9Q07011 255 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 RBMS2Q15434 407 aaKnown RBP11.73□□□□□ -0.53
HDAC6-218ENST00000470942 NOXA1Q86UR1 476 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 CENPSQ8N2Z9 138 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 OR4X1Q8NH49 305 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 DTD1Q8TEA8 209 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 RBKSQ9H477 322 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 UBQLN2Q9UHD9 624 aa11.73□□□□□ -0.53
HDAC6-218ENST00000470942 IGKV3-7A0A075B6H7 116 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 TRAV30A0A087WSZ9 112 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 DUXBA0A1W2PPF3 345 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 OR4C46A6NHA9 309 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 SFT2D2O95562 160 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 BMI1P35226 326 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 PPP1R1AQ13522 171 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 RNASEH2CQ8TDP1 164 aaKnown RBP11.72□□□□□ -0.53
HDAC6-218ENST00000470942 RETNQ9HD89 108 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 HSPB7Q9UBY9 170 aa11.72□□□□□ -0.53
HDAC6-218ENST00000470942 DNAH7Q8WXX0 4024 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 CENPXA8MT69 81 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 SLC25A4P12235 298 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 TFPI2P48307 235 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 RND2P52198 227 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 TIGITQ495A1 244 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 ETFRF1Q6IPR1 90 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 PRSS54Q6PEW0 395 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 TMEM170AQ8WVE7 144 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 CITED4Q96RK1 184 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 SDHCQ99643 169 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-218ENST00000470942 ZFAND3Q9H8U3 227 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 U3KQ87 197 aa11.71□□□□□ -0.53
HDAC6-218ENST00000470942 LOC102724200A0A096LPH7 203 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-218ENST00000470942 IGHV3-66A0A0C4DH42 116 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 C3orf84H3BNL1 204 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 APOHP02749 345 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-218ENST00000470942 TCF24Q7RTU0 167 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 LRTM2Q8N967 370 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 MUC7Q8TAX7 377 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 ST8SIA2Q92186 375 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 FAM110AQ9BQ89 295 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 GGTLC1Q9BX51 225 aa11.7□□□□□ -0.54
HDAC6-218ENST00000470942 NDUFB6O95139 128 aa11.69□□□□□ -0.54
HDAC6-218ENST00000470942 IFNA4P05014 189 aa11.69□□□□□ -0.54
HDAC6-218ENST00000470942 HOXB5P09067 269 aa11.69□□□□□ -0.54
HDAC6-218ENST00000470942 NPPCP23582 126 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 171.9 ms