RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 FAM210BQ96KR6 192 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 MYCBPQ99417 103 aaPredicted RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 URM1Q9BTM9 101 aaKnown RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 HINT2Q9BX68 163 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 CTDSP1Q9GZU7 261 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 RNF167Q9H6Y7 350 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 Q9H8V8 135 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 NDUFA4L2Q9NRX3 87 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 SMPD3Q9NY59 655 aaPredicted RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 THYN1Q9P016 225 aa3.65□□□□□ -1.83
PTPN4-209ENST00000469511 MRPS7Q9Y2R9 242 aaKnown RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 YTHDF2Q9Y5A9 579 aaKnown RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 PUS1Q9Y606 427 aaKnown RBP eCLIP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 F11RQ9Y624 299 aaKnown RBP3.65□□□□□ -1.83
PTPN4-209ENST00000469511 TRAV2A0A0B4J234 112 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 KRTAP29-1A8MX34 341 aaPredicted RBP3.64□□□□□ -1.83
PTPN4-209ENST00000469511 H3BMM0 161 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 SULT1C2O00338 296 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 SLC17A2O00624 439 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 DENRO43583 198 aaKnown RBP3.64□□□□□ -1.83
PTPN4-209ENST00000469511 MT-CO2P00403 227 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 HRASP01112 189 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 DNAH10OSP0CZ25 163 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 TRAPPC2P0DI81 140 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 TRAPPC2BP0DI82 140 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 ST3GAL4Q11206 333 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 KRTAP15-1Q3LI76 137 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 DNAL1Q4LDG9 190 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 TMEM41BQ5BJD5 291 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 HES5Q5TA89 166 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 TMEM91Q6ZNR0 172 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 C1orf158Q8N1D5 194 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 OR56B1Q8NGI3 324 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 FAM3DQ96BQ1 224 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 RAB3CQ96E17 227 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 RNF125Q96EQ8 232 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 HSD17B10Q99714 261 aaKnown RBP3.64□□□□□ -1.83
PTPN4-209ENST00000469511 QTRT1Q9BXR0 403 aaKnown RBP3.64□□□□□ -1.83
PTPN4-209ENST00000469511 COMMD5Q9GZQ3 224 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 DCSTAMPQ9H295 470 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 PLGRKTQ9HBL7 147 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 PPP1R14DQ9NXH3 145 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 ZNF586Q9NXT0 402 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 FAT3Q8TDW7 4589 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 DNAH8Q96JB1 4490 aa3.64□□□□□ -1.83
PTPN4-209ENST00000469511 GAGE10A6NGK3 116 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 DIRAS3O95661 229 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 FCER2P06734 321 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 UCHL1P09936 223 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 FCGR1AP12314 374 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 CD36P16671 472 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 MYL12AP19105 171 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 P2RY1P47900 373 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 MFAP4P55083 255 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 DAD1P61803 113 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 RELQ04864 619 aaPredicted RBP3.63□□□□□ -1.83
PTPN4-209ENST00000469511 POU2AF1Q16633 256 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 HSD17B12Q53GQ0 312 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 LCE5AQ5TCM9 118 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 C1orf146Q5VVC0 180 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 TTC23Q5W5X9 447 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 SSX7Q7RTT5 188 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 NANOGP1Q8N7R0 232 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 ZNF709Q8N972 641 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 CCDC197Q8NCU1 140 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 OR10R2Q8NGX6 335 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 SECTM1Q8WVN6 248 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 PHYHIPQ92561 330 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 TMEM203Q969S6 136 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 PINX1Q96BK5 328 aaKnown RBP3.63□□□□□ -1.83
PTPN4-209ENST00000469511 GRAMD2BQ96HH9 432 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 SLC35B3Q9H1N7 401 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 MED4Q9NPJ6 270 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 ORC6Q9Y5N6 252 aa3.63□□□□□ -1.83
PTPN4-209ENST00000469511 EFCAB10A6NFE3 127 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 F5H768 121 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 SSX5O60225 188 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 GNG7O60262 68 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 TMEM50AO95807 157 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 HPRT1P00492 218 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 EIF4EP06730 217 aaKnown RBP3.62□□□□□ -1.83
PTPN4-209ENST00000469511 DEFB130BP0DP73 79 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 DEFB130AP0DP74 79 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 HIST1H1DP16402 221 aaKnown RBP3.62□□□□□ -1.83
PTPN4-209ENST00000469511 MAPK3P27361 379 aaPredicted RBP3.62□□□□□ -1.83
PTPN4-209ENST00000469511 RASSF2P50749 326 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 WNT4P56705 351 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 OR10A3P58181 314 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 LINC00315P59091 139 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 RPS25P62851 125 aaKnown RBP3.62□□□□□ -1.83
PTPN4-209ENST00000469511 DHRS2Q13268 280 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 OXA1LQ15070 435 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 RAB11BQ15907 218 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 ESRGQ1W209 222 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 SPINK9Q5DT21 86 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 SERTAD4-AS1Q5TG53 156 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 Q6ZS49 121 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 C15orf53Q8NAA6 179 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 DMBX1Q8NFW5 382 aa3.62□□□□□ -1.83
PTPN4-209ENST00000469511 OR1L8Q8NGR8 309 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 1048.4 ms