RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KIF26BQ2KJY2 2108 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 SAA1P0DJI8 122 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 TSPOP30536 169 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 FAM201AQ5SY85 155 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 ZIC4Q8N9L1 334 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 MS4A6AQ9H2W1 248 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 TCRBV4S1A1TA0A5B7 111 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 APOBEC3AP31941 199 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 OR5A1Q8NGJ0 315 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 CD69Q07108 199 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 CCL19Q99731 98 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 MST1LQ2TV78 715 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 FER1L6-AS1Q8NA97 138 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 DEPPQ9NTK1 212 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 IGHV3OR16-13A0A075B7E8 117 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 IGHV3-74A0A0B4J1X5 117 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 EFNA2O43921 213 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 CSRP1P21291 193 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 SBF1O95248 1867 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 OR9G9P0C7N8 305 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 LTBRP36941 435 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 GCSAMLQ5JQS6 135 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 TMEM42Q69YG0 159 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 TREML4Q6UXN2 200 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 FOXC2Q99958 501 aa15.84■□□□□ 0.13
CCDC88B-204ENST00000463837 SEC11AP67812 179 aa15.83■□□□□ 0.13
CCDC88B-204ENST00000463837 C19orf54Q5BKX5 351 aa15.83■□□□□ 0.13
CCDC88B-204ENST00000463837 NDUFS6O75380 124 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 S4R3C0 116 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 IGKV1-27A0A075B6S5 117 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 FAM74A4Q5TZK3 123 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 DLEU1O43261 78 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 FHL1Q13642 323 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 ARTNQ5T4W7 220 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 RPP25LQ8N5L8 163 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 PLXNA3P51805 1871 aa15.83■□□□□ 0.12
CCDC88B-204ENST00000463837 PVRIGQ6DKI7 326 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 FAM216BQ8N7L0 139 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 DDB2Q92466 427 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 DERL1Q9BUN8 251 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 GGTLC1Q9BX51 225 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 GNG5P63218 68 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 ZNF257Q9Y2Q1 563 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 RFNGQ9Y644 331 aa15.82■□□□□ 0.12
CCDC88B-204ENST00000463837 RRN3P1Q2M238 152 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 HBDP02042 147 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 PPBPP02775 128 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 LINC01559Q495D7 138 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 DPM3Q9P2X0 92 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 TYMSP04818 313 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 C10orf91Q5T1B1 145 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 TMEM170BQ5T4T1 132 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 FNDC4Q9H6D8 234 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 SDK2Q58EX2 2172 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 C21orf62Q9NYP8 219 aa15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 FOXA2Q9Y261 457 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-204ENST00000463837 CA1P00915 261 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 SCGB3A1Q96QR1 104 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 FBXL15Q9H469 300 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 ASIPP42127 132 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 ANAPC10Q9UM13 185 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 ORAOV1Q8WV07 137 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 NEU4Q8WWR8 484 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 IGKV1-5P01602 117 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 IGHV3-23P01764 117 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 CELA3BP08861 270 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 MEGF9Q9H1U4 602 aa15.8■□□□□ 0.12
CCDC88B-204ENST00000463837 ESPL1Q14674 2120 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 ZNF56Q15929 161 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 ASCL4Q6XD76 172 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 LINC01560Q8TB33 94 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 LDLRAD2Q5SZI1 272 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 FAM159AQ6UWV7 190 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 M0R381 172 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 OR5AN1Q8NGI8 311 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 MRPS16Q9Y3D3 137 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 FAM57AQ8TBR7 257 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 ABHD17AQ96GS6 310 aa15.79■□□□□ 0.12
CCDC88B-204ENST00000463837 FOXL2NBQ6ZUU3 175 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 C17orf82Q86X59 251 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 RAX2Q96IS3 184 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 NXT2Q9NPJ8 142 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 FAM90A2PQ658T7 463 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 FGFBP3Q8TAT2 258 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 ASCL2Q99929 193 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 HSD52Q0P140 79 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 SAMD13Q5VXD3 122 aa15.78■□□□□ 0.12
CCDC88B-204ENST00000463837 IGHV3-49A0A0A0MS15 119 aa15.77■□□□□ 0.12
CCDC88B-204ENST00000463837 Q5PR19 223 aa15.77■□□□□ 0.12
CCDC88B-204ENST00000463837 MRPL27Q9P0M9 148 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-204ENST00000463837 EP300Q09472 2414 aaPredicted RBP15.77■□□□□ 0.12
CCDC88B-204ENST00000463837 FAM181BA6NEQ2 426 aa15.77■□□□□ 0.12
CCDC88B-204ENST00000463837 PYYP10082 97 aa15.77■□□□□ 0.12
CCDC88B-204ENST00000463837 IGHV3-66A0A0C4DH42 116 aa15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 H7C1H1 209 aa15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 APOMO95445 188 aa15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 FREM3P0C091 2139 aa15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 TET1Q8NFU7 2136 aa15.77■□□□□ 0.11
CCDC88B-204ENST00000463837 TFF1P04155 84 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms