RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ETV6P41212 452 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 ALDH3B2P48448 385 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 HOXA1P49639 335 aaPredicted RBP11.72□□□□□ -0.53
COL7A1-204ENST00000462475 PPP5CP53041 499 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 STHQ8IWL8 128 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 C2CD4CQ8TF44 421 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 ZNF486Q96H40 463 aaPredicted RBP11.72□□□□□ -0.53
COL7A1-204ENST00000462475 FUNDC2Q9BWH2 189 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 FNDC4Q9H6D8 234 aaPredicted RBP11.72□□□□□ -0.53
COL7A1-204ENST00000462475 KLK11Q9UBX7 282 aa11.72□□□□□ -0.53
COL7A1-204ENST00000462475 A0A0G2JRQ6 117 aa11.71□□□□□ -0.53
COL7A1-204ENST00000462475 CLN5O75503 358 aa11.71□□□□□ -0.53
COL7A1-204ENST00000462475 MLANAQ16655 118 aa11.71□□□□□ -0.53
COL7A1-204ENST00000462475 SP6Q3SY56 376 aa11.71□□□□□ -0.53
COL7A1-204ENST00000462475 RNASE10Q5GAN6 216 aaKnown RBP11.71□□□□□ -0.53
COL7A1-204ENST00000462475 TRPT1Q86TN4 253 aaKnown RBP11.71□□□□□ -0.53
COL7A1-204ENST00000462475 STXBP6Q8NFX7 210 aa11.71□□□□□ -0.53
COL7A1-204ENST00000462475 TMEM231Q9H6L2 316 aa11.71□□□□□ -0.53
COL7A1-204ENST00000462475 IGHV4-28A0A0C4DH34 117 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 C3orf85A0A1B0GTC6 90 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 KNCNA6PVL3 124 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 K7EQG2 157 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 CORTO00230 105 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 CD3DP04234 171 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 ZNF688P0C7X2 276 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 C4BPBP20851 252 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 NPPCP23582 126 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 OPRK1P41145 380 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 TRIM16LQ309B1 348 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 ARRDC1Q8N5I2 433 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 OR52I2Q8NH67 350 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 METTL26Q96S19 204 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 PDCD10Q9BUL8 212 aa11.7□□□□□ -0.54
COL7A1-204ENST00000462475 A0A1W2PS18 150 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 FAM25AB3EWG3 89 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 FAM25CB3EWG5 89 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 FAM25GB3EWG6 89 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 IGKV1-17P01599 117 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 RBMY1A1P0DJD3 496 aaKnown RBP11.69□□□□□ -0.54
COL7A1-204ENST00000462475 RBMY1CP0DJD4 496 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 CRYBB3P26998 211 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 P2RY1P47900 373 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 SUB1P53999 127 aaKnown RBP eCLIP11.69□□□□□ -0.54
COL7A1-204ENST00000462475 RBMY1FQ15415 496 aaKnown RBP11.69□□□□□ -0.54
COL7A1-204ENST00000462475 OR4D10Q8NGI6 311 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 OR4X1Q8NH49 305 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 APLNQ9ULZ1 77 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 KIAA1109Q2LD37 5005 aa11.69□□□□□ -0.54
COL7A1-204ENST00000462475 IGLL5B9A064 214 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 ATG12O94817 140 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 UCP1P25874 307 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 TCTAP57738 103 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 BSXQ3C1V8 233 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 TIGITQ495A1 244 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 Q6ZRM9 215 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 GPR141Q7Z602 305 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 OR13C8Q8NGS7 320 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 DCANP1Q8TF63 244 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 GRAMD2BQ96HH9 432 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 HRH4Q9H3N8 390 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 ENY2Q9NPA8 101 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 COPZ2Q9P299 210 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 FAT2Q9NYQ8 4349 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 DNAH2Q9P225 4427 aa11.68□□□□□ -0.54
COL7A1-204ENST00000462475 SPP1P10451 314 aa11.67□□□□□ -0.54
COL7A1-204ENST00000462475 TBPP20226 339 aa11.67□□□□□ -0.54
COL7A1-204ENST00000462475 RORCP51449 518 aa11.67□□□□□ -0.54
COL7A1-204ENST00000462475 RNASE11Q8TAA1 199 aaKnown RBP11.67□□□□□ -0.54
COL7A1-204ENST00000462475 TMEM230Q96A57 120 aa11.67□□□□□ -0.54
COL7A1-204ENST00000462475 RRNAD1Q96FB5 475 aaKnown RBP11.67□□□□□ -0.54
COL7A1-204ENST00000462475 MTFP1Q9UDX5 166 aa11.67□□□□□ -0.54
COL7A1-204ENST00000462475 X6R8D5 127 aa11.67□□□□□ -0.54
COL7A1-204ENST00000462475 ELOA3CA0A087WX78 387 aaPredicted RBP11.66□□□□□ -0.54
COL7A1-204ENST00000462475 ZNF705EA8MWA4 302 aaPredicted RBP11.66□□□□□ -0.54
COL7A1-204ENST00000462475 C11orf94C9JXX5 98 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 MIFP14174 115 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 HLA-DMBP28068 263 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 SCGB2B2Q4G0G5 96 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 TMEM41BQ5BJD5 291 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 ACTL10Q5JWF8 245 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 MORN3Q6PF18 240 aaPredicted RBP11.66□□□□□ -0.54
COL7A1-204ENST00000462475 Q6ZTC4 211 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 CCDC71LQ8N9Z2 235 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 MARCH1Q8TCQ1 289 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 ABHD1Q96SE0 405 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 NAA50Q9GZZ1 169 aaKnown RBP11.66□□□□□ -0.54
COL7A1-204ENST00000462475 CLEC5AQ9NY25 188 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 EXTL2Q9UBQ6 330 aa11.66□□□□□ -0.54
COL7A1-204ENST00000462475 AGRNO00468 2067 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 SCGB2A1O75556 95 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 CD74P04233 296 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 IGLC1P0CG04 106 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 SPCS3P61009 180 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 AARDQ4LEZ3 155 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 MZT2AQ6P582 158 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 TERB2Q8NHR7 220 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 LHFPL5Q8TAF8 219 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 ZFAND1Q8TCF1 268 aa11.65□□□□□ -0.54
COL7A1-204ENST00000462475 NARS2Q96I59 477 aaKnown RBP11.65□□□□□ -0.54
COL7A1-204ENST00000462475 U3KQE9 123 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms