RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CGAP01215 116 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF83P51522 516 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 TNXAQ16473 311 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 FBLN7Q53RD9 439 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM14CQ9P0S9 112 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 TRAV34A0A0B4J273 112 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 TOMM40O96008 361 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 SCGB1C2P0DMR2 95 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 RSPO1Q2MKA7 263 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 CCL11P51671 97 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 ASCL2Q99929 193 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 SLC50A1Q9BRV3 221 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 CLEC7AQ9BXN2 247 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 B9A039 149 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 IGHG3P01860 377 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 HBDP02042 147 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 GPR6P46095 362 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 RTP5Q14D33 572 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 RPRMLQ8N4K4 120 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 LINC00311Q8N616 119 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 POLEQ07864 2286 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 K7EMI3 77 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 OR2J3O76001 311 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 RFPL3SP0C7P2 107 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 SMIM13P0DJ93 91 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 SAA2P0DJI9 122 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 GPR183P32249 361 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 MFAP4P55083 255 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 HOXA4Q00056 320 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 HES1Q14469 280 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM136Q6ZRR5 245 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 PLA2G3Q9NZ20 509 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 CKS2P33552 79 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 RPL30P62888 115 aaKnown RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 MMDQ15546 238 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF837Q96EG3 531 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 NEU1Q99519 415 aa5.83□□□□□ -1.48
SYNE1-216ENST00000461872 LSM4Q9Y4Z0 139 aaKnown RBP5.83□□□□□ -1.48
SYNE1-216ENST00000461872 SPTBN2O15020 2390 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 CECR9P0C854 216 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 CXorf67Q86X51 503 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-216ENST00000461872 VDAC2P45880 294 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-216ENST00000461872 C8orf46Q8TAG6 207 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 SNHG12Q9BXW3 62 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 PLSCR4Q9NRQ2 329 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 COX11Q9Y6N1 276 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 WNT5AP41221 380 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 HINT1P49773 126 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-216ENST00000461872 RHOGP84095 191 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 SCRT1Q9BWW7 348 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 ABCA4P78363 2273 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 PGPA6NDG6 321 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 BLNKQ8WV28 456 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 PCDH15Q96QU1 1955 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 PRSS1P07477 247 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 CD3EP07766 207 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 VHLLQ6RSH7 139 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 LINC00305Q7Z4B0 112 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 POLR3KQ9Y2Y1 108 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-216ENST00000461872 A0A1W2PS18 150 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 IGFBP2P18065 325 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 PLP1P60201 277 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 CACNG7P62955 275 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 MOB3BQ86TA1 216 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 NUP37Q8NFH4 326 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 TTC28Q96AY4 2481 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 IGLC2P0DOY2 106 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 IGLC3P0DOY3 106 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 Q6ZRM9 215 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 LIME1Q9H400 295 aa5.82□□□□□ -1.48
SYNE1-216ENST00000461872 ABHD12Q8N2K0 398 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM116Q8NCL8 245 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 P0C879 139 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 UBALD1Q8TB05 177 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 CHD3Q12873 2000 aaKnown RBP5.81□□□□□ -1.48
SYNE1-216ENST00000461872 A0A1W2PR80 420 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 RNF224P0DH78 156 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 TFF2Q03403 129 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 HES3Q5TGS1 186 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 C3orf80F5H4A9 247 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 CELA2AP08217 269 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 ZDHHC16Q969W1 377 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 VSIRQ9H7M9 311 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 EPOPA6NHQ4 379 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM262E9PQX1 116 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 FSCN3Q9NQT6 498 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 CRXO43186 299 aaPredicted RBP5.81□□□□□ -1.48
SYNE1-216ENST00000461872 TRBV6-1A0A0K0K1D8 114 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 SPINK9Q5DT21 86 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 MDS2Q8NDY4 140 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 V9GYV3 84 aa5.81□□□□□ -1.48
SYNE1-216ENST00000461872 SYS1-DBNDD2H3BUS1 97 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 UCNP55089 124 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 TRIP6Q15654 476 aaKnown RBP5.8□□□□□ -1.48
SYNE1-216ENST00000461872 ZNF726P1Q15940 193 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 ORMDL2Q53FV1 153 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 TMEM75Q8N9X5 138 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 GPR179Q6PRD1 2367 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 OR11H12B2RN74 326 aa5.8□□□□□ -1.48
SYNE1-216ENST00000461872 SPINK4O60575 86 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms