RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 LEPROTL1O95214 131 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 SRFP11831 508 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 PLGLB1Q02325 96 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 CT55Q8WUE5 264 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 DEFB127Q9H1M4 99 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 BOKQ9UMX3 212 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-202ENST00000460593 TANC2Q9HCD6 1990 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 ROS1P08922 2347 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 APOA2P02652 100 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 IGFBP4P22692 258 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 IL11RAQ14626 422 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 BLNKQ8WV28 456 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 SLC25A2Q9BXI2 301 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 TTTY12Q9BZ98 90 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 HILPDAQ9Y5L2 63 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 RP1L1Q8IWN7 2480 aaPredicted RBP9.54□□□□□ -0.88
CPSF3-202ENST00000460593 PATE3B3GLJ2 98 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 CFIP05156 583 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 TMEM251Q8N6I4 163 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 IDI2-AS1Q9NZ38 188 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 OR51B2Q9Y5P1 312 aa9.54□□□□□ -0.88
CPSF3-202ENST00000460593 FAM231BA6NCW3 169 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 TOX4O94842 621 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 HSPE1P61604 102 aaKnown RBP9.53□□□□□ -0.88
CPSF3-202ENST00000460593 COX19Q49B96 90 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 SPRNQ5BIV9 151 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 DUX4L9Q6RFH8 374 aaPredicted RBP9.53□□□□□ -0.88
CPSF3-202ENST00000460593 WDR31Q8NA23 367 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 LRRC29Q8WV35 223 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 SLC25A33Q9BSK2 321 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 CHRDL1Q9BU40 450 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 SLC25A10Q9UBX3 287 aaPredicted RBP9.53□□□□□ -0.88
CPSF3-202ENST00000460593 ZNF835Q9Y2P0 537 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 A0A1W2PRE2 83 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 TMEM11P17152 192 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 C7orf71A4D174 169 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 J3QR06 171 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 IGKV1-16P04430 117 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 C8orf88P0DMB2 117 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 KLF5Q13887 457 aaPredicted RBP9.53□□□□□ -0.88
CPSF3-202ENST00000460593 GRAMD2BQ96HH9 432 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 FAM167A-AS1Q96KT0 104 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 DUSP23Q9BVJ7 150 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 ST20Q9HBF5 79 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 SCRT2Q9NQ03 307 aa9.53□□□□□ -0.88
CPSF3-202ENST00000460593 TIMM8AO60220 97 aaPredicted RBP9.52□□□□□ -0.89
CPSF3-202ENST00000460593 NCR2O95944 276 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 SAA2P0DJI9 122 aaPredicted RBP9.52□□□□□ -0.89
CPSF3-202ENST00000460593 PRDX2P32119 198 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 RAB37Q96AX2 223 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 OR2V2Q96R30 315 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 JMJD8Q96S16 334 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 COMMD5Q9GZQ3 224 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 SRRM4A7MD48 611 aaKnown RBP9.52□□□□□ -0.89
CPSF3-202ENST00000460593 HSBP1L1C9JCN9 74 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 FXYD7P58549 80 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 FAM90A1Q86YD7 464 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 RND1Q92730 232 aa9.52□□□□□ -0.89
CPSF3-202ENST00000460593 K7ERU9 68 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 PEX7O00628 323 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 OR1B1Q8NGR6 318 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 GTSF1Q8WW33 167 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 NANOS1Q8WY41 292 aaKnown RBP9.51□□□□□ -0.89
CPSF3-202ENST00000460593 GAGE10A6NGK3 116 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 IQCF6A8MYZ5 107 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 LOXL3P58215 753 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 CT45A1Q5HYN5 189 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 BHLHA15Q7RTS1 189 aaPredicted RBP9.51□□□□□ -0.89
CPSF3-202ENST00000460593 ZNF329Q86UD4 541 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 CT45A3Q8NHU0 189 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 TMEM14BQ9NUH8 114 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 IGKV1D-17A0A075B6S4 117 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 TRGV8A0A0C4DH27 118 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 GPR183P32249 361 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 TAS2R45P59539 299 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 ARF6P62330 175 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 TMEM105Q8N8V8 129 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 OR4S2Q8NH73 311 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 WIPF2Q8TF74 440 aaPredicted RBP9.51□□□□□ -0.89
CPSF3-202ENST00000460593 CORO2AQ92828 525 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 FAM173AQ9BQD7 235 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 TMUB1Q9BVT8 246 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 GPR179Q6PRD1 2367 aa9.51□□□□□ -0.89
CPSF3-202ENST00000460593 E7EUB6 86 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 ADH4P08319 380 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 IGLC1P0CG04 106 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 C2orf91Q6ZV80 131 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 S100A7AQ86SG5 101 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 DDB2Q92466 427 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 SPOCK3Q9BQ16 436 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 H3BUT2 72 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 OR2J3O76001 311 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 IGHV1-2P23083 117 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 C1orf185Q5T7R7 199 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 C12orf54Q6X4T0 127 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 FER1L6-AS1Q8NA97 138 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 PAXXQ9BUH6 204 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 TMEM191AQ9H0A3 160 aa9.5□□□□□ -0.89
CPSF3-202ENST00000460593 A0A1B0GXF2 115 aa9.49□□□□□ -0.89
CPSF3-202ENST00000460593 CD5LO43866 347 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms