RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 C4orf3Q8WVX3 66 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 MS4A10Q96PG2 267 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RAB40CQ96S21 281 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 P2RX4Q99571 388 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 MAGT1Q9H0U3 335 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 KLK15Q9H2R5 256 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RCL1Q9Y2P8 373 aaKnown RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 U3KQ87 197 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 SSSCA1O60232 199 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 MBPP02686 304 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-214ENST00000454018 PRH1P02810 166 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 PET100P0DJ07 73 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 NPY1RP25929 384 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 H2BFSP57053 126 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 SRSF4Q08170 494 aaKnown RBP6.8□□□□□ -1.32
SYNE1-214ENST00000454018 EXOSC2Q13868 293 aaKnown RBP6.8□□□□□ -1.32
SYNE1-214ENST00000454018 C15orf32Q32M92 178 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 C2orf83Q53S99 150 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 ZNF491Q8N8L2 437 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 KLHL30-AS1Q8NEE0 82 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 SPATA3Q8NHX4 192 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 ASB13Q8WXK3 278 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 DMRT1Q9Y5R6 373 aa6.8□□□□□ -1.32
SYNE1-214ENST00000454018 K7EPK0 472 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 OR2J3O76001 311 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 SIX6O95475 246 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 IFNA10P01566 189 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 LGALS1P09382 135 aaKnown RBP6.79□□□□□ -1.32
SYNE1-214ENST00000454018 IAPPP10997 89 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 PVALBP20472 110 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-214ENST00000454018 MFAP2P55001 183 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 TAS2R30P59541 319 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 S100A10P60903 97 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 POLR2GP62487 172 aaKnown RBP eCLIP6.79□□□□□ -1.32
SYNE1-214ENST00000454018 RUNX1Q01196 453 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 IL15RAQ13261 267 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 KIAA0141Q14154 515 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-214ENST00000454018 FCN2Q15485 313 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 PVRIGQ6DKI7 326 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 SLC25A24Q6NUK1 477 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 OR11H7Q8NGC8 314 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 CXorf58Q96LI9 332 aa6.79□□□□□ -1.32
SYNE1-214ENST00000454018 TRBV7-1A0A0A6YYK4 115 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 A0A1W2PRX2 142 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 M0QZ24 198 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 TSC22D2O75157 780 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 CXCL3P19876 107 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 RAB11AP62491 216 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 DEFA5Q01523 94 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 ATP5G2Q06055 141 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 NSUN5P1Q3KNT7 163 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 Q6ZNX1 250 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 OR4F17Q8NGA8 305 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 RNASEH2CQ8TDP1 164 aaKnown RBP6.78□□□□□ -1.32
SYNE1-214ENST00000454018 VN1R17PQ8TDU5 208 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 EEF1AKMT3Q96AZ1 226 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 SMIM8Q96KF7 97 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 OR4F4Q96R69 305 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 ATP6V0BQ99437 205 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 GNB4Q9HAV0 340 aa6.78□□□□□ -1.32
SYNE1-214ENST00000454018 LSM5Q9Y4Y9 91 aaKnown RBP6.78□□□□□ -1.32
SYNE1-214ENST00000454018 RPS10-NUDT3A0A1W2PQS6 291 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 MFSD2BA6NFX1 497 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 C15orf62A8K5M9 175 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 I3L521 148 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 K7EIM0 57 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 L7N2F9 121 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 TSPAN4O14817 238 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 DEDDO75618 318 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 SCAF4O95104 1147 aaKnown RBP6.77□□□□□ -1.33
SYNE1-214ENST00000454018 NDUFB8O95169 186 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 IGHV3-11P01762 117 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 GIPP09681 153 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-214ENST00000454018 OR8U8P0C7N1 319 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 GCSHP23434 173 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 OPRK1P41145 380 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 ETFRF1Q6IPR1 90 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 C11orf87Q6NUJ2 197 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 ZNF343Q6P1L6 599 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 TMEM170AQ8WVE7 144 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 PPP1R1CQ8WVI7 109 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 PINX1Q96BK5 328 aaKnown RBP6.77□□□□□ -1.33
SYNE1-214ENST00000454018 ZNF436Q9C0F3 470 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-214ENST00000454018 GAR1Q9NY12 217 aaKnown RBP6.77□□□□□ -1.33
SYNE1-214ENST00000454018 PSENENQ9NZ42 101 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 STRAPQ9Y3F4 350 aaKnown RBP6.77□□□□□ -1.33
SYNE1-214ENST00000454018 ANK2Q01484 3957 aa6.77□□□□□ -1.33
SYNE1-214ENST00000454018 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 H3BP45 60 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 I3L2K1 104 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 TMEM50AO95807 157 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 MT-CO2P00403 227 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 RLN2P04090 185 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 IFNA4P05014 189 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 FCGR2BP31994 310 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-214ENST00000454018 LRRC37A5PQ49AS3 106 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 SPANXN5Q5MJ07 72 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 HIST2H2BDQ6DRA6 164 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 C18orf65Q6ZTR6 163 aa6.76□□□□□ -1.33
SYNE1-214ENST00000454018 ZNF502Q8TBZ5 544 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms