RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SLC39A9Q9NUM3 307 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 UBAP1Q9NZ09 502 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 FBXO5Q9UKT4 447 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 AHNAK2Q8IVF2 5795 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 CACNA1BQ00975 2339 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 TRAV14DV4A0A0A6YYC5 116 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 LYPLA2O95372 231 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 CNIH1O95406 144 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 FADDQ13158 208 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 ZNF846Q147U1 533 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 SPA17Q15506 151 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 SPANXN5Q5MJ07 72 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 Q6ZQT0 140 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 OOSP2Q86WS3 158 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 C12orf45Q8N5I9 185 aaPredicted RBP0.83□□□□□ -2.28
USP40-209ENST00000452724 C12orf29Q8N999 325 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 GINS4Q9BRT9 223 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 TMEM147Q9BVK8 224 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 CCDC90BQ9GZT6 254 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 RNF122Q9H9V4 155 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 TP73-AS1Q9UF72 201 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 C22orf24Q9Y442 160 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 V9GYY5 206 aaPredicted RBP0.83□□□□□ -2.28
USP40-209ENST00000452724 TTC21AQ8NDW8 1320 aa0.83□□□□□ -2.28
USP40-209ENST00000452724 NCOA1Q15788 1441 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 hADV38S2A0JD32 116 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 TMEM114B3SHH9 223 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 BUB1B-PAK6H3BSN5 160 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 J3QRK9 145 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 GEMIN2O14893 280 aaKnown RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 OR2B3O76000 313 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 ZNF682O95780 498 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 SERPINE1P05121 402 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 CTSDP07339 412 aaPredicted RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 CTXN2P0C2S0 81 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 RNASE3P12724 160 aaKnown RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 ANP32AP39687 249 aaKnown RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 AP3S2P59780 193 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 YPEL3P61236 119 aaPredicted RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 CDK10Q15131 360 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 DEFB115Q30KQ5 88 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 TRAPPC6BQ86SZ2 158 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 PHF13Q86YI8 300 aaPredicted RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 BPIFA4PQ86YQ2 179 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 HIST3H2BBQ8N257 126 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 GDPD1Q8N9F7 314 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 TRABDQ9H4I3 376 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 NHP2Q9NX24 153 aaKnown RBP0.82□□□□□ -2.28
USP40-209ENST00000452724 GLTPQ9NZD2 209 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 OR5AC2Q9NZP5 309 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 CYSLTR1Q9Y271 337 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 ERGIC3Q9Y282 383 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 PRELID3BQ9Y3B1 194 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 MED12LQ86YW9 2145 aa0.82□□□□□ -2.28
USP40-209ENST00000452724 RP1P56715 2156 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 ALPK2Q86TB3 2170 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 RIC1Q4ADV7 1423 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 NEO1Q92859 1461 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 FAM236DA0A1B0GTK5 79 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 TMEM210A6NLX4 147 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 PDE6DO43924 150 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 FADS1O60427 444 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 OR2J2O76002 312 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 C8GP07360 202 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 BAALC-AS2P0C853 105 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 FAM236CP0DP71 79 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 MIFP14174 115 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 PPIBP23284 216 aaKnown RBP0.81□□□□□ -2.28
USP40-209ENST00000452724 CASP1P29466 404 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 ERVS71-1P61550 626 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 RHEBQ15382 184 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 C12orf74Q32Q52 190 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 Q6Q795 121 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 CLVS1Q8IUQ0 354 aaPredicted RBP0.81□□□□□ -2.28
USP40-209ENST00000452724 KRT222Q8N1A0 295 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 FAM19A2Q8N3H0 131 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 SIGLECL1Q8N7X8 197 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 OR4E2Q8NGC2 313 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 OR5A1Q8NGJ0 315 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 AQP3Q92482 292 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 TLNRD1Q9H1K6 362 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 NMNAT1Q9HAN9 279 aaPredicted RBP0.81□□□□□ -2.28
USP40-209ENST00000452724 PARVBQ9HBI1 364 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 IDI2-AS1Q9NZ38 188 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 MICAL3Q7RTP6 2002 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 ZFYVE9O95405 1425 aa0.81□□□□□ -2.28
USP40-209ENST00000452724 hCG_1818297A0A087WSY0 165 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 C7orf71A4D174 169 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 A8MT66 165 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 OR7C1O76099 320 aaPredicted RBP0.8□□□□□ -2.28
USP40-209ENST00000452724 S100A4P26447 101 aaKnown RBP0.8□□□□□ -2.28
USP40-209ENST00000452724 CDC42P60953 191 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 LINC01554Q52M75 96 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 KHDC3LQ587J8 217 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 TEX36Q5VZQ5 186 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 DNAJC9Q8WXX5 260 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 BTF3L4Q96K17 158 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 RNASE7Q9H1E1 156 aaKnown RBP0.8□□□□□ -2.28
USP40-209ENST00000452724 OSTCQ9NRP0 149 aa0.8□□□□□ -2.28
USP40-209ENST00000452724 UQCC1Q9NVA1 299 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms