RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 IFNA21P01568 189 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 C8orf88P0DMB2 117 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 NPBWR1P48145 328 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 DEFA1P59665 94 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 DEFA3P59666 94 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 Q56UQ5 140 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 C11orf87Q6NUJ2 197 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 UNQ9165/PRO28630Q6UXU0 137 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 NRARPQ7Z6K4 114 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 OR2K2Q8NGT1 345 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 OR4X1Q8NH49 305 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 ENKURQ8TC29 256 aa10.9□□□□□ -0.66
COL3A1-203ENST00000450867 PINX1Q96BK5 328 aaKnown RBP10.9□□□□□ -0.66
COL3A1-203ENST00000450867 ZNF256Q9Y2P7 627 aaPredicted RBP10.9□□□□□ -0.66
COL3A1-203ENST00000450867 RPS10-NUDT3A0A1W2PQS6 291 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 SYNGR2O43760 224 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 GNG7O60262 68 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 SLC25A4P12235 298 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 TMEM116Q8NCL8 245 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 MARC2Q969Z3 335 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 CIB3Q96Q77 187 aaPredicted RBP10.89□□□□□ -0.67
COL3A1-203ENST00000450867 SEC22CQ9BRL7 303 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 MARVELD1Q9BSK0 173 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 PALMDQ9NP74 551 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 MRPL36Q9P0J6 103 aaKnown RBP10.89□□□□□ -0.67
COL3A1-203ENST00000450867 UFC1Q9Y3C8 167 aa10.89□□□□□ -0.67
COL3A1-203ENST00000450867 K7EMT4 169 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 NUPL2O15504 423 aaKnown RBP10.88□□□□□ -0.67
COL3A1-203ENST00000450867 PRAF2O60831 178 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 CLN5O75503 358 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 TMEM50AO95807 157 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 IFNA10P01566 189 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 IGHV3-48P01763 117 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 FOLR2P14207 255 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 CBLN1P23435 193 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 OPRK1P41145 380 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 RELQ04864 619 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-203ENST00000450867 C12orf45Q8N5I9 185 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-203ENST00000450867 UBAC2Q8NBM4 344 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 OR10C1Q96KK4 312 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 DAZ1Q9NQZ3 744 aaKnown RBP10.88□□□□□ -0.67
COL3A1-203ENST00000450867 ZC4H2Q9NQZ6 224 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 TECRQ9NZ01 308 aaKnown RBP10.88□□□□□ -0.67
COL3A1-203ENST00000450867 COL7A1Q02388 2944 aa10.88□□□□□ -0.67
COL3A1-203ENST00000450867 C15orf62A8K5M9 175 aa10.87□□□□□ -0.67
COL3A1-203ENST00000450867 SPNP16150 400 aa10.87□□□□□ -0.67
COL3A1-203ENST00000450867 NKX2-1P43699 371 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-203ENST00000450867 DCTN2Q13561 401 aaKnown RBP10.87□□□□□ -0.67
COL3A1-203ENST00000450867 MLANAQ16655 118 aa10.87□□□□□ -0.67
COL3A1-203ENST00000450867 IAH1Q2TAA2 248 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-203ENST00000450867 ETFRF1Q6IPR1 90 aa10.87□□□□□ -0.67
COL3A1-203ENST00000450867 PRSS54Q6PEW0 395 aa10.87□□□□□ -0.67
COL3A1-203ENST00000450867 ZBTB8BQ8NAP8 495 aaPredicted RBP10.87□□□□□ -0.67
COL3A1-203ENST00000450867 MRPL27Q9P0M9 148 aaKnown RBP10.87□□□□□ -0.67
COL3A1-203ENST00000450867 LSM4Q9Y4Z0 139 aaKnown RBP10.87□□□□□ -0.67
COL3A1-203ENST00000450867 TRAV30A0A087WSZ9 112 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 IGHV3-35A0A0C4DH35 117 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 ZNF320A2RRD8 509 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 SNRPGP15A8MWD9 76 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 PRSS46E5RG02 174 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 IGKV1-17P01599 117 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 EDN2P20800 178 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 GPX4P36969 197 aaPredicted RBP10.86□□□□□ -0.67
COL3A1-203ENST00000450867 CD69Q07108 199 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 DEFB114Q30KQ6 69 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 TM4SF20Q53R12 229 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 LCN12Q6JVE5 192 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 ZNF600Q6ZNG1 722 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 HAPLN4Q86UW8 402 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 MRAPQ8TCY5 172 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 MAGT1Q9H0U3 335 aa10.86□□□□□ -0.67
COL3A1-203ENST00000450867 INMT-MINDY4F8WBC2 141 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 IGLC1P0CG04 106 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 IAPPP10997 89 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 GP9P14770 177 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 POLR2GP62487 172 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL3A1-203ENST00000450867 UXS1Q8NBZ7 420 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 CACNG8Q8WXS5 425 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 SMIM8Q96KF7 97 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 PRR25Q96S07 402 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 ZFAND3Q9H8U3 227 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 GPN1Q9HCN4 374 aaPredicted RBP10.85□□□□□ -0.67
COL3A1-203ENST00000450867 MLXQ9UH92 298 aa10.85□□□□□ -0.67
COL3A1-203ENST00000450867 WRBO00258 174 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 SCGB2A1O75556 95 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 RND2P52198 227 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 TAS2R30P59541 319 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 RAB11AP62491 216 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 RPP30P78346 268 aaKnown RBP10.84□□□□□ -0.67
COL3A1-203ENST00000450867 IL15RAQ13261 267 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 CD300EQ496F6 205 aaPredicted RBP10.84□□□□□ -0.67
COL3A1-203ENST00000450867 SLC16A13Q7RTY0 426 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 OR1S2Q8NGQ3 325 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 RAB40CQ96S21 281 aa10.84□□□□□ -0.67
COL3A1-203ENST00000450867 RCL1Q9Y2P8 373 aaKnown RBP10.84□□□□□ -0.67
COL3A1-203ENST00000450867 TRAV25A0A0B4J276 109 aa10.83□□□□□ -0.68
COL3A1-203ENST00000450867 IZUMO1RA6ND01 250 aa10.83□□□□□ -0.68
COL3A1-203ENST00000450867 CCSO14618 274 aa10.83□□□□□ -0.68
COL3A1-203ENST00000450867 PTTG1O95997 202 aa10.83□□□□□ -0.68
COL3A1-203ENST00000450867 MBPP02686 304 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms