RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 SMCO1Q147U7 214 aa18.61■□□□□ 0.57
RAPGEF1-206ENST00000438647 BAK1Q16611 211 aa18.61■□□□□ 0.57
RAPGEF1-206ENST00000438647 CENPSQ8N2Z9 138 aa18.61■□□□□ 0.57
RAPGEF1-206ENST00000438647 HIPK2Q9H2X6 1198 aa18.61■□□□□ 0.57
RAPGEF1-206ENST00000438647 RPS10-NUDT3A0A1W2PQS6 291 aa18.6■□□□□ 0.57
RAPGEF1-206ENST00000438647 CD7P09564 240 aa18.6■□□□□ 0.57
RAPGEF1-206ENST00000438647 LAMTOR1Q6IAA8 161 aa18.6■□□□□ 0.57
RAPGEF1-206ENST00000438647 NOXA1Q86UR1 476 aa18.6■□□□□ 0.57
RAPGEF1-206ENST00000438647 CENPXA8MT69 81 aa18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 SCAF4O95104 1147 aaKnown RBP18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 C2orf83Q53S99 150 aa18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 SLC24A4Q8NFF2 622 aa18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 OR52B4Q8NGK2 314 aa18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 OR10C1Q96KK4 312 aa18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 SELENOKQ9Y6D0 94 aa18.59■□□□□ 0.57
RAPGEF1-206ENST00000438647 IGHV3OR16-8A0A075B7F1 116 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 A0A1B0GU03 582 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 UBE2MP61081 183 aaKnown RBP18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 TNFRSF9Q07011 255 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 LRTM2Q8N967 370 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 RNASEH2CQ8TDP1 164 aaKnown RBP18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 RCHY1Q96PM5 261 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 SPAG8Q99932 426 aaPredicted RBP18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 C7orf50Q9BRJ6 194 aaKnown RBP18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 GINS3Q9BRX5 216 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 HSPB7Q9UBY9 170 aa18.58■□□□□ 0.56
RAPGEF1-206ENST00000438647 OR11H12B2RN74 326 aa18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 ZNF207O43670 478 aaKnown RBP18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 NXPH3O95157 252 aa18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 SFT2D2O95562 160 aa18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 ZNF600Q6ZNG1 722 aa18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 OR4X1Q8NH49 305 aa18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 SDHCQ99643 169 aaPredicted RBP18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 TM2D3Q9BRN9 247 aa18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 FNDC4Q9H6D8 234 aaPredicted RBP18.57■□□□□ 0.56
RAPGEF1-206ENST00000438647 TSPAN4O14817 238 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 CLN5O75503 358 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 TMEM50AO95807 157 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 PPP1R1AQ13522 171 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 OR1S1Q8NH92 325 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 SMPXQ9UHP9 88 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 TMED3Q9Y3Q3 217 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 U3KQ87 197 aa18.56■□□□□ 0.56
RAPGEF1-206ENST00000438647 TRAV14DV4A0A0A6YYC5 116 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 IGHV7-4-1A0A0J9YVY3 117 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 NDUFB6O95139 128 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 IL7P13232 177 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 NPY1RP25929 384 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 BMI1P35226 326 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 DEFB125Q8N687 156 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 TMEM116Q8NCL8 245 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 DTD1Q8TEA8 209 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 ZNF414Q96IQ9 312 aa18.55■□□□□ 0.56
RAPGEF1-206ENST00000438647 TRAV30A0A087WSZ9 112 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 LINC00854A0A1B0GVQ3 168 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 SLC25A4P12235 298 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 SLC25A6P12236 298 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 ETFRF1Q6IPR1 90 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 TOMM20LQ6UXN7 152 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 SRD5A3Q9H8P0 318 aa18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 PUS1Q9Y606 427 aaKnown RBP eCLIP18.54■□□□□ 0.56
RAPGEF1-206ENST00000438647 IFNA10P01566 189 aa18.53■□□□□ 0.56
RAPGEF1-206ENST00000438647 ATP5IP56385 69 aaPredicted RBP18.53■□□□□ 0.56
RAPGEF1-206ENST00000438647 HAGHQ16775 308 aa18.53■□□□□ 0.56
RAPGEF1-206ENST00000438647 SPATA25Q9BR10 227 aa18.53■□□□□ 0.56
RAPGEF1-206ENST00000438647 RHPN1-AS1Q9BWJ2 59 aa18.53■□□□□ 0.56
RAPGEF1-206ENST00000438647 RBKSQ9H477 322 aa18.53■□□□□ 0.56
RAPGEF1-206ENST00000438647 CHEK1O14757 476 aa18.52■□□□□ 0.56
RAPGEF1-206ENST00000438647 MLANAQ16655 118 aa18.52■□□□□ 0.56
RAPGEF1-206ENST00000438647 WFDC10AQ9H1F0 79 aa18.52■□□□□ 0.56
RAPGEF1-206ENST00000438647 MRPL36Q9P0J6 103 aaKnown RBP18.52■□□□□ 0.56
RAPGEF1-206ENST00000438647 STAB2Q8WWQ8 2551 aa18.52■□□□□ 0.56
RAPGEF1-206ENST00000438647 OR4C46A6NHA9 309 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 FAM90A26D6RGX4 464 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 PITX3O75364 302 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 CD5P06127 495 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 CNPY1Q3B7I2 92 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 LINC00299Q6ZSB3 139 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 ZFAND3Q9H8U3 227 aa18.51■□□□□ 0.55
RAPGEF1-206ENST00000438647 PRSS54Q6PEW0 395 aa18.5■□□□□ 0.55
RAPGEF1-206ENST00000438647 LINC00322Q6ZN03 302 aaPredicted RBP18.5■□□□□ 0.55
RAPGEF1-206ENST00000438647 TMEM170AQ8WVE7 144 aa18.5■□□□□ 0.55
RAPGEF1-206ENST00000438647 RNF2Q99496 336 aa18.5■□□□□ 0.55
RAPGEF1-206ENST00000438647 C9orf170A2RU37 121 aa18.49■□□□□ 0.55
RAPGEF1-206ENST00000438647 MED6O75586 246 aa18.49■□□□□ 0.55
RAPGEF1-206ENST00000438647 RND2P52198 227 aa18.49■□□□□ 0.55
RAPGEF1-206ENST00000438647 OR1S2Q8NGQ3 325 aa18.49■□□□□ 0.55
RAPGEF1-206ENST00000438647 COQ8AQ8NI60 647 aa18.49■□□□□ 0.55
RAPGEF1-206ENST00000438647 TMEM231Q9H6L2 316 aa18.49■□□□□ 0.55
RAPGEF1-206ENST00000438647 IGHV3-49A0A0A0MS15 119 aa18.48■□□□□ 0.55
RAPGEF1-206ENST00000438647 IGKV1-17P01599 117 aa18.48■□□□□ 0.55
RAPGEF1-206ENST00000438647 HOXB5P09067 269 aa18.48■□□□□ 0.55
RAPGEF1-206ENST00000438647 BTCP35070 178 aa18.48■□□□□ 0.55
RAPGEF1-206ENST00000438647 FLVCR2Q9UPI3 526 aa18.48■□□□□ 0.55
RAPGEF1-206ENST00000438647 TENM3Q9P273 2699 aa18.47■□□□□ 0.55
RAPGEF1-206ENST00000438647 RBMY1BA6NDE4 496 aaKnown RBP18.47■□□□□ 0.55
RAPGEF1-206ENST00000438647 RBMY1EA6NEQ0 496 aaKnown RBP18.47■□□□□ 0.55
RAPGEF1-206ENST00000438647 IFNA4P05014 189 aa18.47■□□□□ 0.55
RAPGEF1-206ENST00000438647 OR4E1P0C645 316 aa18.47■□□□□ 0.55
RAPGEF1-206ENST00000438647 RBMY1DP0C7P1 496 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms