RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ZNF436Q9C0F3 470 aaPredicted RBP14.16□□□□□ -0.14
SHH-203ENST00000435425 PALMDQ9NP74 551 aa14.16□□□□□ -0.14
SHH-203ENST00000435425 SIGLEC8Q9NYZ4 499 aa14.16□□□□□ -0.14
SHH-203ENST00000435425 TMEM213A2RRL7 107 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 IZUMO1RA6ND01 250 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 IFNA21P01568 189 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 IAPPP10997 89 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 SLC25A6P12236 298 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 CBLN1P23435 193 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 NPBWR1P48145 328 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 IFITM3Q01628 133 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 MAGT1Q9H0U3 335 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 FNDC4Q9H6D8 234 aaPredicted RBP14.15□□□□□ -0.14
SHH-203ENST00000435425 UFC1Q9Y3C8 167 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 SORL1Q92673 2214 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 DNAH3Q8TD57 4116 aa14.15□□□□□ -0.14
SHH-203ENST00000435425 MPTX1A8MV57 137 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 NDUFA4O00483 81 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 ZNF207O43670 478 aaKnown RBP14.14□□□□□ -0.15
SHH-203ENST00000435425 YIF1AO95070 293 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 CD300EQ496F6 205 aaPredicted RBP14.14□□□□□ -0.15
SHH-203ENST00000435425 UXS1Q8NBZ7 420 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 ENKURQ8TC29 256 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 TMEM170AQ8WVE7 144 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 SEC22CQ9BRL7 303 aa14.14□□□□□ -0.15
SHH-203ENST00000435425 MRPL36Q9P0J6 103 aaKnown RBP14.14□□□□□ -0.15
SHH-203ENST00000435425 RPS10-NUDT3A0A1W2PQS6 291 aa14.13□□□□□ -0.15
SHH-203ENST00000435425 A8MWP6 167 aa14.13□□□□□ -0.15
SHH-203ENST00000435425 FCGR2BP31994 310 aaPredicted RBP14.13□□□□□ -0.15
SHH-203ENST00000435425 RELQ04864 619 aaPredicted RBP14.13□□□□□ -0.15
SHH-203ENST00000435425 LCN12Q6JVE5 192 aa14.13□□□□□ -0.15
SHH-203ENST00000435425 NOXA1Q86UR1 476 aa14.13□□□□□ -0.15
SHH-203ENST00000435425 TMEM190Q8WZ59 177 aa14.13□□□□□ -0.15
SHH-203ENST00000435425 PAIP2BQ9ULR5 123 aaKnown RBP14.13□□□□□ -0.15
SHH-203ENST00000435425 U3KQ87 197 aa14.13□□□□□ -0.15
SHH-203ENST00000435425 FAM90A26D6RGX4 464 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 WRBO00258 174 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 MED6O75586 246 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 TMEM50AO95807 157 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 DEFB114Q30KQ6 69 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 RNASEH2CQ8TDP1 164 aaKnown RBP14.12□□□□□ -0.15
SHH-203ENST00000435425 MITD1Q8WV92 249 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 MLXQ9UH92 298 aa14.12□□□□□ -0.15
SHH-203ENST00000435425 LSM4Q9Y4Z0 139 aaKnown RBP14.12□□□□□ -0.15
SHH-203ENST00000435425 SYNGR2O43760 224 aa14.11□□□□□ -0.15
SHH-203ENST00000435425 IFNA4P05014 189 aa14.11□□□□□ -0.15
SHH-203ENST00000435425 ELLP55199 621 aaPredicted RBP14.11□□□□□ -0.15
SHH-203ENST00000435425 GUCA2BQ16661 112 aa14.11□□□□□ -0.15
SHH-203ENST00000435425 BTNL8Q6UX41 500 aa14.11□□□□□ -0.15
SHH-203ENST00000435425 TECRQ9NZ01 308 aaKnown RBP14.11□□□□□ -0.15
SHH-203ENST00000435425 MRPL27Q9P0M9 148 aaKnown RBP14.11□□□□□ -0.15
SHH-203ENST00000435425 CCSO14618 274 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 CLN5O75503 358 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 SCGB1D2O95969 90 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 RND2P52198 227 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 DCTN2Q13561 401 aaKnown RBP14.1□□□□□ -0.15
SHH-203ENST00000435425 ETFRF1Q6IPR1 90 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 OR2K2Q8NGT1 345 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 OR4X1Q8NH49 305 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 ZNF431Q8TF32 576 aaPredicted RBP14.1□□□□□ -0.15
SHH-203ENST00000435425 ZNF414Q96IQ9 312 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 OR10C1Q96KK4 312 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 GSKIPQ9P0R6 139 aa14.1□□□□□ -0.15
SHH-203ENST00000435425 IGHV3-49A0A0A0MS15 119 aa14.09□□□□□ -0.15
SHH-203ENST00000435425 NKX2-1P43699 371 aaPredicted RBP14.09□□□□□ -0.15
SHH-203ENST00000435425 IAH1Q2TAA2 248 aaPredicted RBP14.09□□□□□ -0.15
SHH-203ENST00000435425 TIGITQ495A1 244 aa14.09□□□□□ -0.15
SHH-203ENST00000435425 PRSS54Q6PEW0 395 aa14.09□□□□□ -0.15
SHH-203ENST00000435425 C12orf45Q8N5I9 185 aaPredicted RBP14.09□□□□□ -0.15
SHH-203ENST00000435425 MARC2Q969Z3 335 aa14.09□□□□□ -0.15
SHH-203ENST00000435425 WDR89Q96FK6 387 aaPredicted RBP14.09□□□□□ -0.15
SHH-203ENST00000435425 ACY3Q96HD9 319 aa14.09□□□□□ -0.15
SHH-203ENST00000435425 DAZ1Q9NQZ3 744 aaKnown RBP14.09□□□□□ -0.15
SHH-203ENST00000435425 SMAD5-AS1Q9Y6J3 95 aa14.09□□□□□ -0.15
SHH-203ENST00000435425 FAM25EA8MYX2 175 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 K7EMT4 169 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 SCAF4O95104 1147 aaKnown RBP14.08□□□□□ -0.16
SHH-203ENST00000435425 C8orf88P0DMB2 117 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 SLC25A4P12235 298 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 DEFA1P59665 94 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 DEFA3P59666 94 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 POLR2GP62487 172 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHH-203ENST00000435425 RAB11AP62491 216 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 CD69Q07108 199 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 TOMM20LQ6UXN7 152 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 ZNF600Q6ZNG1 722 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 SLC16A13Q7RTY0 426 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 NRARPQ7Z6K4 114 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 OR4D5Q8NGN0 318 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 NPIPB3Q92617 1050 aa14.08□□□□□ -0.16
SHH-203ENST00000435425 CIB3Q96Q77 187 aaPredicted RBP14.08□□□□□ -0.16
SHH-203ENST00000435425 PUS1Q9Y606 427 aaKnown RBP eCLIP14.08□□□□□ -0.16
SHH-203ENST00000435425 TRAV30A0A087WSZ9 112 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 C15orf62A8K5M9 175 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 ZNF785A8K8V0 405 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 H3BP45 60 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 SCGB2A1O75556 95 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 RPP30P78346 268 aaKnown RBP14.07□□□□□ -0.16
SHH-203ENST00000435425 ID3Q02535 119 aa14.07□□□□□ -0.16
SHH-203ENST00000435425 SPANXN5Q5MJ07 72 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms