RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 KLF3P57682 345 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 PSG9Q00887 426 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 NOXRED1Q6NXP6 359 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 CLDND2Q8NHS1 167 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 SLAMF6Q96DU3 332 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 BORCS8Q96FH0 119 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 SCGB3A1Q96QR1 104 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 GPX7Q96SL4 187 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 SLC25A21Q9BQT8 299 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 YIPF3Q9GZM5 350 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 TCEAL2Q9H3H9 227 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 TRAPPC2LQ9UL33 140 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 BRWD3Q6RI45 1802 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 ATAD5Q96QE3 1844 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 CAMSAP2Q08AD1 1489 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 BCL9O00512 1426 aa3.02□□□□□ -1.93
CCDC88A-206ENST00000430086 TRAV5A0A0B4J249 113 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 ZNF860A6NHJ4 632 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 BUB1B-PAK6H3BSN5 160 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 TPST1O60507 370 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 UCHL1P09936 223 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 UBBP0CG47 229 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 LGALS3P17931 250 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 RPS3P23396 243 aaKnown RBP eCLIP3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 NDUFA6P56556 154 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 ZNF117Q03924 483 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 EIF3IQ13347 325 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 ZNF141Q15928 474 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 MIR17HGQ75NE6 70 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 BPIFA4PQ86YQ2 179 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 HIST3H2BBQ8N257 126 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 OR8D4Q8NGM9 314 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 MUC7Q8TAX7 377 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 SMCR5Q8TEV8 140 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 C1orf54Q8WWF1 131 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 TEX37Q96LM6 180 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 GINS4Q9BRT9 223 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 TTTY13Q9BZ97 58 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 CACYBPQ9HB71 228 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 OSTCQ9NRP0 149 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 CABIN1Q9Y6J0 2220 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 MYH2Q9UKX2 1941 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 TECPR2O15040 1411 aa3.01□□□□□ -1.93
CCDC88A-206ENST00000430086 MED23Q9ULK4 1368 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 PCM1Q15154 2024 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 IGKV1D-37A0A075B6S9 117 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 TRAV40A0A0B4J280 105 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 A0A0J9YW62 118 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 TMEM235A6NFC5 223 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 TMEM212A6NML5 194 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 C5orf58C9J3I9 102 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 TP53I11O14683 189 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 OVOL1O14753 267 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 IGLV3-19P01714 112 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 NFYAP23511 347 aaPredicted RBP3□□□□□ -1.93
CCDC88A-206ENST00000430086 CD24P25063 80 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 UBE2BP63146 152 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 MORN2Q502X0 79 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 LINC01554Q52M75 96 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 C1orf140Q5VVS0 124 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 PRR15Q8IV56 129 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 TCTE3Q8IZS6 198 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 OR10P1Q8NGE3 313 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 OR2H1Q9GZK4 316 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 TXNL4BQ9NX01 149 aaKnown RBP3□□□□□ -1.93
CCDC88A-206ENST00000430086 HECW1Q76N89 1606 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 KIF13BQ9NQT8 1826 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 SCN1AP35498 2009 aa3□□□□□ -1.93
CCDC88A-206ENST00000430086 IGKV1D-17A0A075B6S4 117 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 IGHV3OR16-8A0A075B7F1 116 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 TRGV10A0A0A0MS01 117 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 LOC102725191A0A1B0GVB3 256 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 A0A1W2PQD3 144 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 C19orf71A6NCJ1 209 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 ARRDC5A6NEK1 342 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 C16orf90A8MZG2 172 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 H3BPC8 53 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 SLC22A1O15245 554 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 CST7O76096 145 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 MSMBP08118 114 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 SCTP09683 121 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 MPC1LP0DKB6 136 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 GZMBP10144 247 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 XCL1P47992 114 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 KRTAP13-2Q52LG2 175 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 ZNF660Q6AZW8 331 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 SPINT4Q6UDR6 99 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 LRRC28Q86X40 367 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 OR4C16Q8NGL9 310 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 TERB2Q8NHR7 220 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 HIST1H2BLQ99880 126 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 LXNQ9BS40 222 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 ZNF443Q9Y2A4 671 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 HEY1Q9Y5J3 304 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 RALGAPA2Q2PPJ7 1873 aa2.99□□□□□ -1.93
CCDC88A-206ENST00000430086 IGHV3-15A0A0B4J1V0 119 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 GABARAPH6UMI1 98 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 K7EP13 123 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 OR2T1O43869 369 aa2.98□□□□□ -1.93
CCDC88A-206ENST00000430086 LYZL6O75951 148 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms