RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 GDF1P27539 372 aa12.09□□□□□ -0.47
NCKIPSD-204ENST00000416649 HTR1DP28221 377 aa12.09□□□□□ -0.47
NCKIPSD-204ENST00000416649 FABP6P51161 128 aa12.09□□□□□ -0.47
NCKIPSD-204ENST00000416649 PLP2Q04941 152 aa12.09□□□□□ -0.47
NCKIPSD-204ENST00000416649 NANOS1Q8WY41 292 aaKnown RBP12.09□□□□□ -0.47
NCKIPSD-204ENST00000416649 HILPDAQ9Y5L2 63 aa12.09□□□□□ -0.47
NCKIPSD-204ENST00000416649 ZNF137PP52743 207 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 SAMD13Q5VXD3 122 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 GTF2H5Q6ZYL4 71 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 FAM214BQ7L5A3 538 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 MOB3BQ86TA1 216 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 SLC25A40Q8TBP6 338 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 SNRNP40Q96DI7 357 aaKnown RBP12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 TMEM167BQ9NRX6 74 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 TNCP24821 2201 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 PCSK5Q92824 1860 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 IGHV1-24A0A0C4DH33 117 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 TMEM30CPA0ZSE6 113 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 CSN3P07498 182 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 CYB561P49447 251 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 HIST1H1AQ02539 215 aaPredicted RBP12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 C16orf54Q6UWD8 224 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 URB1-AS1Q96HZ7 61 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 NABP2Q9BQ15 211 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 MPC1Q9Y5U8 109 aa12.08□□□□□ -0.48
NCKIPSD-204ENST00000416649 G3V4G9 280 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 HAND1O96004 215 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 ERVK-16P61578 105 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 BPIFA4PQ86YQ2 179 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 OR4S2Q8NH73 311 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 OR2V2Q96R30 315 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 DCTN5Q9BTE1 182 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 TET2Q6N021 2002 aaPredicted RBP12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 WNT9BO14905 357 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 RPL24P83731 157 aaKnown RBP12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 FOXF2Q12947 444 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 WDR86Q86TI4 376 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 C12orf49Q9H741 205 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 SCRT2Q9NQ03 307 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 CD46P15529 392 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 TCF24Q7RTU0 167 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 TNFRSF14Q92956 283 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 TCF19Q9Y242 345 aa12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 LSM4Q9Y4Z0 139 aaKnown RBP12.07□□□□□ -0.48
NCKIPSD-204ENST00000416649 NBASA2RRP1 2371 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 GPR12P47775 334 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 B3GALT5-AS1P59052 145 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 PKIBQ9C010 78 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 GTSF1LQ9H1H1 148 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 A0A1W2PRE2 83 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 ZNF883P0CG24 379 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 MYOD1P15172 320 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 VDAC2P45880 294 aaPredicted RBP12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 ARF6P62330 175 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 EIF4EBP1Q13541 118 aaPredicted RBP12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 EDDM3AQ14507 147 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 ZNF826PQ6ZT77 177 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 RTL8AQ9BWD3 113 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 MAP1LC3CQ9BXW4 147 aa12.06□□□□□ -0.48
NCKIPSD-204ENST00000416649 SPTA1P02549 2419 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 HIST1H1EP10412 219 aaKnown RBP12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 SMAGPQ0VAQ4 97 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 FAM120AOSQ5T036 256 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 TUSC5Q8IXB3 177 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 TMEM116Q8NCL8 245 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 ZNF503Q96F45 646 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 JMJD8Q96S16 334 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 PCNX1Q96RV3 2341 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 ANKRD11Q6UB99 2663 aaPredicted RBP12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 OOEPA6NGQ2 149 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 FBLL1A6NHQ2 334 aaKnown RBP12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 PRSS46E5RG02 174 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 PLP1P60201 277 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 KLF5Q13887 457 aaPredicted RBP12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 ABHD17BQ5VST6 288 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 ENY2Q9NPA8 101 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 SVEP1Q4LDE5 3571 aa12.05□□□□□ -0.48
NCKIPSD-204ENST00000416649 TRAV5A0A0B4J249 113 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 UBE2L3P68036 154 aaKnown RBP12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 OR1C1Q15619 314 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 TMEM97Q5BJF2 176 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 BHLHA15Q7RTS1 189 aaPredicted RBP12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 SVIPQ8NHG7 77 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 Q8TCH9 128 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 IGF2BP2-AS1Q96M15 143 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 GNG12Q9UBI6 72 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 POLDIP2Q9Y2S7 368 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 SPTBN4Q9H254 2564 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 NHLH1Q02575 133 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 RBPJQ06330 500 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 RPL39P5Q59GN2 51 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 VWA1Q6PCB0 445 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 Q6ZR03 302 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 TMEM140Q9NV12 185 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 PKDREJQ9NTG1 2253 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 C21orf140B9A014 251 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 J3QR06 171 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 J3QW42 95 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 DNPH1O43598 174 aa12.04□□□□□ -0.48
NCKIPSD-204ENST00000416649 ALKBH6Q3KRA9 238 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms