RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TMEM126AQ9H061 195 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 ARID2Q68CP9 1835 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 ERCC8Q13216 396 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 FBXL7Q9UJT9 491 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 LEAP2Q969E1 77 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 LILRA1O75019 489 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 H2BFSP57053 126 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 NDUFS5O43920 106 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 BCL6BQ8N143 479 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 C21orf62Q9NYP8 219 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 CEACAM8P31997 349 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 ADAMTSL5Q6ZMM2 481 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 TRBV20-1A0A075B6N2 111 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 RASL10AQ92737 203 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 IGHG3P01860 377 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 LHX2P50458 406 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 ASPHD2Q6ICH7 369 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 TTTY12Q9BZ98 90 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 MUC4Q99102 2169 aa11.3□□□□□ -0.6
CCDC88A-204ENST00000413716 CCL3P10147 92 aa11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 RNF115Q9Y4L5 304 aa11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 C2CD4DB7Z1M9 353 aa11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 OR5P3Q8WZ94 311 aa11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 TMEM187Q14656 261 aa11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 KLF17Q5JT82 389 aaPredicted RBP11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 GREB1LQ9C091 1923 aaPredicted RBP11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 MSRB3Q8IXL7 192 aa11.29□□□□□ -0.6
CCDC88A-204ENST00000413716 GVINP1Q7Z2Y8 2422 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 TFF3Q07654 80 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 UCNP55089 124 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 ROS1P08922 2347 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 ACACAQ13085 2346 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 KIR3DS1Q14943 382 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 IRF3Q14653 427 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 C1orf210Q8IVY1 113 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 TCRBV5S1A1TA0A578 114 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 C9JAW5 83 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 VDAC2P45880 294 aaPredicted RBP11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 FOXL1Q12952 345 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 LINC01555Q8NAE3 123 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 GP6Q9HCN6 339 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 TMEM190Q8WZ59 177 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 IFI27L2Q9H2X8 130 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 MYMXA0A1B0GTQ4 84 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 IQCF6A8MYZ5 107 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 UBE2CO00762 179 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 CLEC19AQ6UXS0 136 aa11.28□□□□□ -0.6
CCDC88A-204ENST00000413716 DUSP14O95147 198 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 IGFBP2P18065 325 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 UBE2V1Q13404 147 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 GLMPQ8WWB7 406 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 DLL3Q9NYJ7 618 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 NPIPB13A6NJU9 1138 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 PRR33A8MZF0 331 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 TM4SF5O14894 197 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 CTGFP29279 349 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 NANOS3P60323 173 aaKnown RBP11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 FAM214BQ7L5A3 538 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 GPHA2Q96T91 129 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 KLHDC2Q9Y2U9 406 aa11.27□□□□□ -0.6
CCDC88A-204ENST00000413716 IGKV1D-33P01593 117 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 IGKV1-33P01594 117 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 PSG4Q00888 419 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 NRXN3Q9Y4C0 1643 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 STRCP1A6NGW2 1772 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 IGLV3-16A0A075B6K0 115 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 A0A1W2PRX2 142 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 IFITM2Q01629 132 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 PILRBQ9UKJ0 227 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 A0A1W2PQF6 199 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 IGLV3-25P01717 112 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 LRP10Q7Z4F1 713 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 GUSBP1Q15486 140 aa11.27□□□□□ -0.61
CCDC88A-204ENST00000413716 C6orf226Q5I0X4 101 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 TNFSF13O75888 250 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 C9orf50Q5SZB4 431 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 TMEM144Q7Z5S9 345 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 IGHV1-69-2A0A0G2JMI3 117 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 RAMP1O60894 148 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 RSPO2Q6UXX9 243 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 OSR1Q8TAX0 266 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BKO60814 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BJP06899 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BOP23527 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BBP33778 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BDP58876 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BCP62807 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST2H2BEQ16778 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 TMEM196Q5HYL7 178 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 LDLRAD1Q5T700 205 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 ZNF826PQ6ZT77 177 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BHQ93079 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BNQ99877 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 HIST1H2BMQ99879 126 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 NPDC1Q9NQX5 325 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 SIPA1L3O60292 1781 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 TM4SF4P48230 202 aa11.26□□□□□ -0.61
CCDC88A-204ENST00000413716 TIMM21Q9BVV7 248 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms