RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PSG3Q16557 428 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 TRAV24A0A0B4J272 114 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 SIVA1O15304 175 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 TMEM74BQ9NUR3 256 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 PLXNB3Q9ULL4 1909 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 PVRIGQ6DKI7 326 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 TBX6O95947 436 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-206ENST00000409809 CFAP161Q6P656 301 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 DLL3Q9NYJ7 618 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 CT62P0C5K7 136 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 GFRA1P56159 465 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 MPV17L2Q567V2 206 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 IDI2-AS1Q9NZ38 188 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 SELLP14151 372 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 Q9H3A6 140 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 LY6G6FQ5SQ64 297 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 RNF115Q9Y4L5 304 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 FAM231BA6NCW3 169 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 TAL2Q16559 108 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 FAM117AQ9C073 453 aa10.92□□□□□ -0.66
COL6A3-206ENST00000409809 GP6Q9HCN6 339 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 UPK2O00526 184 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 SNAI2O43623 268 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 THADAQ6YHU6 1953 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 MUC21A0A0G2JKD1 596 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 MUC21A0A140T8X8 626 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 MAGEA5P43359 124 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 ALKBH6Q3KRA9 238 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 MUC21Q5SSG8 566 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 LHFPL6Q9Y693 200 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 A0A0G2JK05 382 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 SMAD7O15105 426 aaKnown RBP10.91□□□□□ -0.66
COL6A3-206ENST00000409809 FOXQ1Q9C009 403 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 LEPROTO15243 131 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 HIST1H4AP62805 103 aaKnown RBP10.91□□□□□ -0.66
COL6A3-206ENST00000409809 GAGE2AQ6NT46 116 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 MSGN1A6NI15 193 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 PIN1P1O15428 100 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 REG1AP05451 166 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 GFRALQ6UXV0 394 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 KLHDC3Q9BQ90 382 aa10.91□□□□□ -0.66
COL6A3-206ENST00000409809 LYL1P12980 280 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 TEX45Q8NA69 505 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 HTN1P15515 57 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 UNQ5815/PRO19632Q6UWF5 114 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 DUSP15Q9H1R2 295 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-206ENST00000409809 ATP5G2Q06055 141 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 FNDC10F2Z333 226 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 LINC01551Q86U37 167 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 SEPSECSQ9HD40 501 aaKnown RBP10.9□□□□□ -0.66
COL6A3-206ENST00000409809 METTL12A8MUP2 240 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 PATE1Q8WXA2 126 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 WFDC6Q9BQY6 131 aa10.9□□□□□ -0.66
COL6A3-206ENST00000409809 FOXL2P58012 376 aa10.9□□□□□ -0.67
COL6A3-206ENST00000409809 IL18BPO95998 194 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 FAM74A4Q5TZK3 123 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 GFI1BQ5VTD9 330 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 TOMM40O96008 361 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 BRCA1P38398 1863 aaKnown RBP10.89□□□□□ -0.67
COL6A3-206ENST00000409809 C1orf53Q5VUE5 145 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 KLF4O43474 513 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 RFLNBQ8N5W9 214 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 CXCL1P09341 107 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 MALP21145 153 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 MED13Q9UHV7 2174 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 FOXI3A8MTJ6 420 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-206ENST00000409809 LAIR2Q6ISS4 152 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 C10orf91Q5T1B1 145 aa10.89□□□□□ -0.67
COL6A3-206ENST00000409809 RNASE7Q9H1E1 156 aaKnown RBP10.89□□□□□ -0.67
COL6A3-206ENST00000409809 CSTL1Q9H114 145 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 SPATA31B1PQ5VZV4 182 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 CCL4L1Q8NHW4 92 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 CFHR5Q9BXR6 569 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 ATP5G1P05496 136 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 LINC00271P0C7V0 271 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 ATP5G3P48201 142 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 OR11H6Q8NGC7 330 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 LDLRAD4O15165 306 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 RTN4RL2Q86UN3 420 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 CLEC7AQ9BXN2 247 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 NBASA2RRP1 2371 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 ZNF688P0C7X2 276 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 VWA8A3KMH1 1905 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 IGHV1OR21-1A0A087WYE8 117 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 TRAV12-3A0A0B4J271 114 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 MRPL20Q9BYC9 149 aaKnown RBP10.88□□□□□ -0.67
COL6A3-206ENST00000409809 LAMTOR3Q9UHA4 124 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 SIP14410 1827 aa10.88□□□□□ -0.67
COL6A3-206ENST00000409809 C15orf61A6NNL5 157 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 LINC01590Q5TEZ4 76 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 ZPLD1Q8TCW7 415 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 SNHG12Q9BXW3 62 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 SHANK3Q9BYB0 1731 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 CCL2P13500 99 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 C1QTNF4Q9BXJ3 329 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 TCRBV4S1A1TA0A5B7 111 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 PRSS53Q2L4Q9 553 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 ZNF721Q8TF20 911 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 RAMP3O60896 148 aa10.87□□□□□ -0.67
COL6A3-206ENST00000409809 ZFP36L2P47974 494 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms