RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NIPBLQ6KC79 2804 aaeCLIP10.69□□□□□ -0.7
LIMS1-204ENST00000409441 B4DEV8 164 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 VENTXO95231 258 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 IFNA4P05014 189 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 PNRC1Q12796 327 aaPredicted RBP10.69□□□□□ -0.7
LIMS1-204ENST00000409441 HNF4GQ14541 408 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 PDPNQ86YL7 162 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 OR5B3Q8NH48 314 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 OR4A5Q8NH83 315 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 C20orf24Q9BUV8 137 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 PLEKHA3Q9HB20 300 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 NPVFQ9HCQ7 196 aa10.69□□□□□ -0.7
LIMS1-204ENST00000409441 CTRB1P17538 263 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 MAS1LP35410 378 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 AKR1C3P42330 323 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 CDC34P49427 236 aaPredicted RBP10.68□□□□□ -0.7
LIMS1-204ENST00000409441 EBI3Q14213 229 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 HES1Q14469 280 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 LY6EQ16553 131 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 FAM90A2PQ658T7 463 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 CTRB2Q6GPI1 263 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 TREML4Q6UXN2 200 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 OR2T10Q8NGZ9 312 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 OR5R1Q8NH85 324 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM170AQ8WVE7 144 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 HIST1H2BAQ96A08 127 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 EAF1Q96JC9 268 aaPredicted RBP10.68□□□□□ -0.7
LIMS1-204ENST00000409441 RITA1Q96K30 269 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 DUX5Q96PT3 197 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 SLC25A22Q9H936 323 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 WASHC3Q9Y3C0 194 aa10.68□□□□□ -0.7
LIMS1-204ENST00000409441 SMCO3A2RU48 225 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 MOSP00540 346 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 IGKV1-16P04430 117 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 CRYBA1P05813 215 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 PSMB3P49720 205 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 CEBPGP53567 150 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 MEF2BQ02080 365 aaPredicted RBP10.67□□□□□ -0.7
LIMS1-204ENST00000409441 FBLN7Q53RD9 439 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 VSTM2AQ8TAG5 236 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 RAB24Q969Q5 203 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 ESM1Q9NQ30 184 aa10.67□□□□□ -0.7
LIMS1-204ENST00000409441 A6NDX4 124 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 SRRM4A7MD48 611 aaKnown RBP10.66□□□□□ -0.7
LIMS1-204ENST00000409441 INS-IGF2F8WCM5 200 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM250H0YL14 139 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 SAA1P0DJI8 122 aaPredicted RBP10.66□□□□□ -0.7
LIMS1-204ENST00000409441 HILS1P60008 231 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 RAB31Q13636 194 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM219Q86XT9 240 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM86BQ8N661 226 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 OR4C13Q8NGP0 309 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 FLYWCH2Q96CP2 140 aaKnown RBP10.66□□□□□ -0.7
LIMS1-204ENST00000409441 HARBI1Q96MB7 349 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 MGST2Q99735 147 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 GGTLC1Q9BX51 225 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 LSM4Q9Y4Z0 139 aaKnown RBP10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TEX50A0A1B0GTY4 177 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 CXorf65A6NEN9 183 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 DNAJC9-AS1A6NH13 148 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TCF21O43680 179 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 OR2C1O95371 312 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 CA2P00918 260 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM11P17152 192 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 C2orf83Q53S99 150 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TEPPQ6URK8 271 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 OR1L8Q8NGR8 309 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 TMEM167AQ8TBQ9 72 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 JMJD8Q96S16 334 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 PITPNC1Q9UKF7 332 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 VPREB3Q9UKI3 123 aa10.66□□□□□ -0.7
LIMS1-204ENST00000409441 CLDN34H7C241 214 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 RAB5BP61020 215 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 BSXQ3C1V8 233 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 SMUG1Q53HV7 270 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 LURAP1LQ8IV03 231 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 Q8N6K4 173 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 RNF5Q99942 180 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 PXMP4Q9Y6I8 212 aa10.65□□□□□ -0.7
LIMS1-204ENST00000409441 A0A1W2PN81 502 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 A0A1W2PPV4 95 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 C1orf196B1AJZ1 125 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 YIF1AO95070 293 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 CHRNA7P36544 502 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 RPL29P47914 159 aaKnown RBP10.64□□□□□ -0.71
LIMS1-204ENST00000409441 CD81P60033 236 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 RPL8P62917 257 aaKnown RBP10.64□□□□□ -0.71
LIMS1-204ENST00000409441 ARSJQ5FYB0 599 aaPredicted RBP10.64□□□□□ -0.71
LIMS1-204ENST00000409441 YPEL4Q96NS1 127 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 RBM14Q96PK6 669 aaKnown RBP10.64□□□□□ -0.71
LIMS1-204ENST00000409441 HINT2Q9BX68 163 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 COMMD5Q9GZQ3 224 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 SDF2L1Q9HCN8 221 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 BIN3Q9NQY0 253 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 NDUFA4L2Q9NRX3 87 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 TMEM242Q9NWH2 141 aa10.64□□□□□ -0.71
LIMS1-204ENST00000409441 NCBP2LA6PVI3 153 aaKnown RBP10.63□□□□□ -0.71
LIMS1-204ENST00000409441 CNTFRP26992 372 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 LGALS7P47929 136 aa10.63□□□□□ -0.71
LIMS1-204ENST00000409441 ISOC2Q96AB3 205 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms