RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 PRDM13Q9H4Q3 707 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 MANBALQ9NQG1 85 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 H3BQ15 152 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 RNASE2P10153 161 aaKnown RBP11.86□□□□□ -0.51
CAPN3-207ENST00000397200 CDC34P49427 236 aaPredicted RBP11.86□□□□□ -0.51
CAPN3-207ENST00000397200 FAM122CQ6P4D5 195 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 RBMS3Q6XE24 437 aaKnown RBP11.86□□□□□ -0.51
CAPN3-207ENST00000397200 Q6YL49 198 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 SLC35E3Q7Z769 313 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 SIGLECL1Q8N7X8 197 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 EAF1Q96JC9 268 aaPredicted RBP11.86□□□□□ -0.51
CAPN3-207ENST00000397200 RPS10P5Q9NQ39 176 aa11.86□□□□□ -0.51
CAPN3-207ENST00000397200 MXRA5Q9NR99 2828 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 CGB1A6NKQ9 187 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 M0R036 132 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 TMEM11P17152 192 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 IER3P46695 156 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 EBI3Q14213 229 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 HNF4GQ14541 408 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 MRGPRG-AS1Q2M3A8 158 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 TEPPQ6URK8 271 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 PIFOQ8TCI5 191 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 PXMP4Q9Y6I8 212 aa11.85□□□□□ -0.51
CAPN3-207ENST00000397200 ANK3Q12955 4377 aaKnown RBP11.84□□□□□ -0.51
CAPN3-207ENST00000397200 A0A087WWC5 75 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 SMCO3A2RU48 225 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 IGHV4-59P01825 116 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 FOLR2P14207 255 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 MAS1LP35410 378 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 RPL29P47914 159 aaKnown RBP11.84□□□□□ -0.51
CAPN3-207ENST00000397200 LGALS7P47929 136 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 CD81P60033 236 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 MEF2BQ02080 365 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-207ENST00000397200 OR5R1Q8NH85 324 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 SSMEM1Q8WWF3 244 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 RNF5Q99942 180 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 COMMD5Q9GZQ3 224 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 PUS1Q9Y606 427 aaKnown RBP eCLIP11.84□□□□□ -0.51
CAPN3-207ENST00000397200 TNCP24821 2201 aa11.84□□□□□ -0.51
CAPN3-207ENST00000397200 NSD1Q96L73 2696 aaPredicted RBP11.83□□□□□ -0.52
CAPN3-207ENST00000397200 A0A1W2PN81 502 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 CRLF1O75462 422 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 CRYGBP07316 175 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 CHRNA7P36544 502 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PSMB3P49720 205 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PRR20EP86478 221 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PRR20CP86479 221 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PRR20DP86480 221 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PRR20BP86481 221 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PRR20AP86496 221 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 LY6EQ16553 131 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 VMA21Q3ZAQ7 101 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 TEX45Q8NA69 505 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 TVP23CQ96ET8 276 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 RITA1Q96K30 269 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 YPEL4Q96NS1 127 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 NIPSNAP3BQ9BS92 247 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 C20orf24Q9BUV8 137 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 HINT2Q9BX68 163 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 PITPNC1Q9UKF7 332 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 MTORP42345 2549 aa11.83□□□□□ -0.52
CAPN3-207ENST00000397200 TMEM250H0YL14 139 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 HOXA3O43365 443 aaPredicted RBP11.82□□□□□ -0.52
CAPN3-207ENST00000397200 EIF3GO75821 320 aaKnown RBP eCLIP11.82□□□□□ -0.52
CAPN3-207ENST00000397200 AKR1C3P42330 323 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 FLI1Q01543 452 aaPredicted RBP11.82□□□□□ -0.52
CAPN3-207ENST00000397200 PNRC1Q12796 327 aaPredicted RBP11.82□□□□□ -0.52
CAPN3-207ENST00000397200 MMDQ15546 238 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 FBLN7Q53RD9 439 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 TMEM144Q7Z5S9 345 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 Q8N6K4 173 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 TMPRSS5Q9H3S3 457 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 ZNF430Q9H8G1 570 aaPredicted RBP11.82□□□□□ -0.52
CAPN3-207ENST00000397200 ZFHX3Q15911 3703 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 E7EUB6 86 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 OPN1MWP04001 364 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 STAG3L2P0CL84 134 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 STAG3L3P0CL85 134 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 OPN1MW2P0DN77 364 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 OPN1MW3P0DN78 364 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 CD69Q07108 199 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 GCSAMLQ5JQS6 135 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 MIC13Q5XKP0 118 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 PVRIGQ6DKI7 326 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 TMEM219Q86XT9 240 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 OR10W1Q8NGF6 305 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 ZNF418Q8TF45 676 aaPredicted RBP11.82□□□□□ -0.52
CAPN3-207ENST00000397200 HIST1H2BAQ96A08 127 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 TNFRSF19Q9NS68 423 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 C1RLQ9NZP8 487 aa11.82□□□□□ -0.52
CAPN3-207ENST00000397200 A6NDX4 124 aa11.81□□□□□ -0.52
CAPN3-207ENST00000397200 B4DEV8 164 aa11.81□□□□□ -0.52
CAPN3-207ENST00000397200 HMGB3O15347 200 aaKnown RBP11.81□□□□□ -0.52
CAPN3-207ENST00000397200 NBR2O15453 112 aa11.81□□□□□ -0.52
CAPN3-207ENST00000397200 DEFA4P12838 97 aa11.81□□□□□ -0.52
CAPN3-207ENST00000397200 CNTFRP26992 372 aa11.81□□□□□ -0.52
CAPN3-207ENST00000397200 GPX4P36969 197 aaPredicted RBP11.81□□□□□ -0.52
CAPN3-207ENST00000397200 ERHP84090 104 aaKnown RBP11.81□□□□□ -0.52
CAPN3-207ENST00000397200 WT1-ASQ06250 92 aa11.81□□□□□ -0.52
CAPN3-207ENST00000397200 RAB31Q13636 194 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms