RNA–Protein interactions for RNA: ENST00000396854.8

TM9SF1-202, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 1 (best) BASIC

Gene TM9SF1, Length 2,055 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-202ENST00000396854 APOA2P02652 100 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 MC5RP33032 325 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 AARDQ4LEZ3 155 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 PDPNQ86YL7 162 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 R3HDM4Q96D70 268 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 MEGF9Q9H1U4 602 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 SLC35D1Q9NTN3 355 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 A0A0U1RQK1 487 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 TIMM23O14925 209 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 ADIRFQ15847 76 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 RTL8BQ17RB0 113 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 FAM120AOSQ5T036 256 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 MOB3BQ86TA1 216 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 ZNF709Q8N972 641 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 SMR3AQ99954 134 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 PYGO2Q9BRQ0 406 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 WASHC3Q9Y3C0 194 aa11.88□□□□□ -0.51
TM9SF1-202ENST00000396854 C17orf112F2Z3M2 114 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 LY86O95711 162 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 LY6G6DO95868 133 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 CD1BP29016 333 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 BSXQ3C1V8 233 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 TET2Q6N021 2002 aaPredicted RBP11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 C15orf62A8K5M9 175 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 PFN1P07737 140 aaKnown RBP11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 RPL23P62829 140 aaKnown RBP11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 HNF4GQ14541 408 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 C16orf82Q7Z2V1 217 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 RAB24Q969Q5 203 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 PARLQ9H300 379 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 SRD5A3Q9H8P0 318 aa11.87□□□□□ -0.51
TM9SF1-202ENST00000396854 TLN2Q9Y4G6 2542 aa11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 HMGB3O15347 200 aaKnown RBP11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 RBMXL2O75526 392 aaKnown RBP11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 IGKV1-16P04430 117 aa11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 TMEM177Q53S58 311 aa11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 DNLZQ5SXM8 178 aa11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 GFI1BQ5VTD9 330 aa11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 RPUSD4Q96CM3 377 aaKnown RBP11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 GPR61Q9BZJ8 451 aa11.86□□□□□ -0.51
TM9SF1-202ENST00000396854 IGHV3-72A0A0B4J1Y9 119 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 SOX15O60248 233 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 VENTXO95231 258 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 ERVK-16P61578 105 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 POU2AF1Q16633 256 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 ACOT6Q3I5F7 207 aaPredicted RBP11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 LURAP1LQ8IV03 231 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 OR10D4PQ8NGN7 298 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 OR4C13Q8NGP0 309 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 OR4F5Q8NH21 305 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 OSR1Q8TAX0 266 aaPredicted RBP11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 GATAD1Q8WUU5 269 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 OR4F4Q96R69 305 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 QTRT1Q9BXR0 403 aaKnown RBP11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 SOX21Q9Y651 276 aaPredicted RBP11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 SMCO3A2RU48 225 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 OR9G9P0C7N8 305 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 HNF1AP20823 631 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 BRS3P32247 399 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 EBI3Q14213 229 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 FAM209BQ5JX69 171 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 FLYWCH2Q96CP2 140 aaKnown RBP11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 WDR83OSQ9Y284 106 aa11.85□□□□□ -0.51
TM9SF1-202ENST00000396854 CDC34P49427 236 aaPredicted RBP11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 RPS16P62249 146 aaKnown RBP11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 SPINK9Q5DT21 86 aa11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 BCL6BQ8N143 479 aaPredicted RBP11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 OR51G1Q8NGK1 321 aa11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 ANAPC16Q96DE5 110 aa11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 PITPNC1Q9UKF7 332 aa11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 HIVEP1P15822 2718 aa11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 ZFHX3Q15911 3703 aa11.84□□□□□ -0.51
TM9SF1-202ENST00000396854 H7BYZ3 331 aa11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 SPCS3P61009 180 aa11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 PDLIM3Q53GG5 364 aaPredicted RBP11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 IL17RELQ6ZVW7 336 aa11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 OR4X1Q8NH49 305 aa11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 OR52E5Q8NH55 327 aa11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 RNF5Q99942 180 aa11.83□□□□□ -0.51
TM9SF1-202ENST00000396854 PAGE4O60829 102 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 MPDU1O75352 247 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 GALR1P47211 349 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 RPP30P78346 268 aaKnown RBP11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 DEFB112Q30KQ8 113 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 HARBI1Q96MB7 349 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 OR5B12Q96R08 314 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 PRDM13Q9H4Q3 707 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 TMEM140Q9NV12 185 aa11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 ANK3Q12955 4377 aaKnown RBP11.83□□□□□ -0.52
TM9SF1-202ENST00000396854 MOSP00540 346 aa11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 HRASP01112 189 aa11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 SRP14P37108 136 aaKnown RBP11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 PDZD11Q5EBL8 140 aa11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 CDPF1Q6NVV7 123 aa11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 Q8N6K4 173 aa11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 OR2T10Q8NGZ9 312 aa11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 EAF1Q96JC9 268 aaPredicted RBP11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 SRRM4A7MD48 611 aaKnown RBP11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 HIST1H1BP16401 226 aaKnown RBP11.82□□□□□ -0.52
TM9SF1-202ENST00000396854 LGALS7P47929 136 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms