RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SMIM10Q96HG1 83 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 CTSBP07858 339 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 NPIPB13A6NJU9 1138 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 NKX2-8O15522 239 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 FXYD7P58549 80 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 TNFRSF14Q92956 283 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 PPBPP02775 128 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 TRIP6Q15654 476 aaKnown RBP9.93□□□□□ -0.82
SYNPO-202ENST00000394243 LY6EQ16553 131 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 ORMDL2Q53FV1 153 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 PTPRZ1P23471 2315 aaPredicted RBP9.93□□□□□ -0.82
SYNPO-202ENST00000394243 NDUFA2O43678 99 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 IFI6P09912 130 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 OR13A1Q8NGR1 328 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 POLR3KQ9Y2Y1 108 aaPredicted RBP9.93□□□□□ -0.82
SYNPO-202ENST00000394243 TDGF1P13385 188 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 ADCYAP1P18509 176 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 ID3Q02535 119 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 LINC01551Q86U37 167 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 RFNGQ9Y644 331 aa9.93□□□□□ -0.82
SYNPO-202ENST00000394243 NCOR1P1Q9H4R4 102 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 GBF1Q92538 1859 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 C9orf153Q5TBE3 101 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 DCTN5Q9BTE1 182 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 SYS1-DBNDD2H3BUS1 97 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 PRB4P10163 310 aaPredicted RBP9.92□□□□□ -0.82
SYNPO-202ENST00000394243 PRR7Q8TB68 274 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 MCRIP2Q9BUT9 160 aaKnown RBP9.92□□□□□ -0.82
SYNPO-202ENST00000394243 PSG8Q9UQ74 426 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 PAPPAQ13219 1627 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 GFI1Q99684 422 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 SMPXQ9UHP9 88 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 FREM3P0C091 2139 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 ASCL2Q99929 193 aa9.92□□□□□ -0.82
SYNPO-202ENST00000394243 DUX3Q96PT4 197 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 IGHV2-70P01814 119 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 SCRT1Q9BWW7 348 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 FBXL7Q9UJT9 491 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 LGALS1P09382 135 aaKnown RBP9.91□□□□□ -0.82
SYNPO-202ENST00000394243 LAGE3Q14657 143 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 LHFPL4Q7Z7J7 247 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 SLC22A18ASQ8N1D0 253 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.91□□□□□ -0.82
SYNPO-202ENST00000394243 C21orf62Q9NYP8 219 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 TRBV6-7A0A0A0MS04 114 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 PRR33A8MZF0 331 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 D6R8Y8 96 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 IFNL4K9M1U5 179 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 MST1P26927 711 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 RTN4RL2Q86UN3 420 aa9.91□□□□□ -0.82
SYNPO-202ENST00000394243 SEPSECSQ9HD40 501 aaKnown RBP9.91□□□□□ -0.82
SYNPO-202ENST00000394243 A0A0A6YYD4 124 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 NCR2O95944 276 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 PHLDA1Q8WV24 401 aaPredicted RBP9.9□□□□□ -0.82
SYNPO-202ENST00000394243 AKAP6Q13023 2319 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 FAM231BA6NCW3 169 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 TRGV3P03979 118 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 BMPERQ8N8U9 685 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 TMPRSS3P57727 454 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 FAM90A2PQ658T7 463 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 CFAP161Q6P656 301 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 LCNL1Q6ZST4 164 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 GLMPQ8WWB7 406 aa9.9□□□□□ -0.82
SYNPO-202ENST00000394243 TRAV1-1A0A0B4J248 108 aa9.9□□□□□ -0.83
SYNPO-202ENST00000394243 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.9□□□□□ -0.83
SYNPO-202ENST00000394243 MRPL20Q9BYC9 149 aaKnown RBP9.9□□□□□ -0.83
SYNPO-202ENST00000394243 TSSC4Q9Y5U2 329 aaPredicted RBP9.9□□□□□ -0.83
SYNPO-202ENST00000394243 IGKV1D-8A0A087WSZ0 117 aa9.9□□□□□ -0.83
SYNPO-202ENST00000394243 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.9□□□□□ -0.83
SYNPO-202ENST00000394243 CDKN1AP38936 164 aa9.9□□□□□ -0.83
SYNPO-202ENST00000394243 KLF17Q5JT82 389 aaPredicted RBP9.9□□□□□ -0.83
SYNPO-202ENST00000394243 KLF12Q9Y4X4 402 aa9.9□□□□□ -0.83
SYNPO-202ENST00000394243 CD7P09564 240 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 CD28P10747 220 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 PAX1P15863 534 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 LHX2P50458 406 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 MESP2Q0VG99 397 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 COL11A1P12107 1806 aaPredicted RBP9.89□□□□□ -0.83
SYNPO-202ENST00000394243 A0A1W2PQF6 199 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 TMEM238C9JI98 176 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 PAQR4Q8N4S7 273 aaPredicted RBP9.89□□□□□ -0.83
SYNPO-202ENST00000394243 C15orf61A6NNL5 157 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 GHRHP01286 108 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 GATD1Q8NB37 220 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 TCRBV4S1A1TA0A5B7 111 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 J3QRE1 110 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 ATAD5Q96QE3 1844 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 C9JAW5 83 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 FOXH1O75593 365 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 HGFACQ04756 655 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 RASL11AQ6T310 242 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 TMEM171Q8WVE6 324 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 NEUROG3Q9Y4Z2 214 aa9.89□□□□□ -0.83
SYNPO-202ENST00000394243 ZNF319Q9P2F9 582 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 CCL21O00585 134 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 FAM201AQ5SY85 155 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 CLEC19AQ6UXS0 136 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 C1orf210Q8IVY1 113 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 NUP35Q8NFH5 326 aa9.88□□□□□ -0.83
SYNPO-202ENST00000394243 AHRRA9YTQ3 701 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms