RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SMIM7Q9BQ49 75 aa20.06■□□□□ 0.8
SHOX2-201ENST00000389589 MRPL32Q9BYC8 188 aaKnown RBP20.06■□□□□ 0.8
SHOX2-201ENST00000389589 SDF2L1Q9HCN8 221 aa20.06■□□□□ 0.8
SHOX2-201ENST00000389589 TECRQ9NZ01 308 aaKnown RBP20.06■□□□□ 0.8
SHOX2-201ENST00000389589 IGKV1D-37A0A075B6S9 117 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 CLN5O75503 358 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 COX6B1P14854 86 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 TAS2R45P59539 299 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 FXYD3Q14802 87 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 TMEM116Q8NCL8 245 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 OR1L6Q8NGR2 347 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 SLC25A33Q9BSK2 321 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 ZNF462Q96JM2 2506 aa20.05■□□□□ 0.8
SHOX2-201ENST00000389589 IGHV4-61A0A0C4DH41 118 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 COLCA2A8K830 154 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 UBE2G2P60604 165 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 PAX8Q06710 450 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 CST9LP1Q5W188 147 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 MIR17HGQ75NE6 70 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 MRPL36Q9P0J6 103 aaKnown RBP20.04■□□□□ 0.8
SHOX2-201ENST00000389589 NAT8Q9UHE5 227 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 F6UZH7 168 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 FAM106CPP0CH98 169 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 BRS3P32247 399 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 OR1L4Q8NGR5 311 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 PFDN5Q99471 154 aa20.04■□□□□ 0.8
SHOX2-201ENST00000389589 IGHV3-48P01763 117 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 TMEM11P17152 192 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 PQLC2Q6ZP29 291 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 TRGV9Q99603 122 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 DNAJC4Q9NNZ3 241 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 PAX1P15863 534 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 CTRB1P17538 263 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 SAA4P35542 130 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 TMEM241Q24JQ0 296 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 CTRB2Q6GPI1 263 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 ZNF562Q6V9R5 426 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 RPUSD4Q96CM3 377 aaKnown RBP20.03■□□□□ 0.8
SHOX2-201ENST00000389589 AJUBAQ96IF1 538 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 PARLQ9H300 379 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 TMEM167BQ9NRX6 74 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 ARL2-SNX15V9GYD0 113 aa20.03■□□□□ 0.8
SHOX2-201ENST00000389589 COL12A1Q99715 3063 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 PSMB11A5LHX3 300 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 NPFFO15130 113 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 DSCR9P59020 149 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 ZNF674Q2M3X9 581 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 C19orf35Q6ZS72 473 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 WNT10AQ9GZT5 417 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 TNFRSF19Q9NS68 423 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 C1RLQ9NZP8 487 aa20.02■□□□□ 0.8
SHOX2-201ENST00000389589 NCBP2LA6PVI3 153 aaKnown RBP20.01■□□□□ 0.79
SHOX2-201ENST00000389589 BPIFB3P59826 476 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 SRSF1Q07955 248 aaKnown RBP eCLIP20.01■□□□□ 0.79
SHOX2-201ENST00000389589 FBLN7Q53RD9 439 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 TMEM37Q8WXS4 190 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 OR2C1O95371 312 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 ATP5G3P48201 142 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 ZNF90Q03938 601 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 DMRT1Q9Y5R6 373 aa20.01■□□□□ 0.79
SHOX2-201ENST00000389589 ABCA2Q9BZC7 2435 aa20■□□□□ 0.79
SHOX2-201ENST00000389589 LOC105371267A0A1B0GV96 52 aa20■□□□□ 0.79
SHOX2-201ENST00000389589 COX7A2P2O60397 106 aa20■□□□□ 0.79
SHOX2-201ENST00000389589 MT-ND4LP03901 98 aa20■□□□□ 0.79
SHOX2-201ENST00000389589 C8orf88P0DMB2 117 aa20■□□□□ 0.79
SHOX2-201ENST00000389589 IGHV4-30-2A0A087WSY4 118 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 CXorf65A6NEN9 183 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 PERPQ96FX8 193 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 CENPVL3A0A0U1RRI6 287 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 OR4X1Q8NH49 305 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 ARPC1AQ92747 370 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 ISOC2Q96AB3 205 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 PRELID1Q9Y255 219 aa19.99■□□□□ 0.79
SHOX2-201ENST00000389589 UBR5O95071 2799 aaPredicted RBP19.98■□□□□ 0.79
SHOX2-201ENST00000389589 I3L2K1 104 aa19.98■□□□□ 0.79
SHOX2-201ENST00000389589 CX3CL1P78423 397 aa19.98■□□□□ 0.79
SHOX2-201ENST00000389589 C10orf113Q5VZT2 155 aa19.98■□□□□ 0.79
SHOX2-201ENST00000389589 HIST1H2BAQ96A08 127 aa19.98■□□□□ 0.79
SHOX2-201ENST00000389589 ELOA3CA0A087WX78 387 aaPredicted RBP19.98■□□□□ 0.79
SHOX2-201ENST00000389589 TMEM242Q9NWH2 141 aa19.98■□□□□ 0.79
SHOX2-201ENST00000389589 YTHDF2Q9Y5A9 579 aaKnown RBP19.98■□□□□ 0.79
SHOX2-201ENST00000389589 NPIPB5A8MRT5 1133 aa19.97■□□□□ 0.79
SHOX2-201ENST00000389589 OR7C2O60412 319 aa19.97■□□□□ 0.79
SHOX2-201ENST00000389589 NPPCP23582 126 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 RUSC1-AS1Q66K80 236 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 PIP4P2Q8N4L2 257 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 FOLR2P14207 255 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 RNF212Q495C1 297 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 OR51G1Q8NGK1 321 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 UHRF2Q96PU4 802 aa19.96■□□□□ 0.79
SHOX2-201ENST00000389589 FAM103A1Q9BTL3 118 aaKnown RBP19.96■□□□□ 0.79
SHOX2-201ENST00000389589 IGHV3-21A0A0B4J1V1 117 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 KIAA0141Q14154 515 aaPredicted RBP19.95■□□□□ 0.78
SHOX2-201ENST00000389589 FAM120AOSQ5T036 256 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 Q8N9W7 124 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 ZNF503Q96F45 646 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 CTDSP1Q9GZU7 261 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 DOK5Q9P104 306 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 ADIRFQ15847 76 aa19.95■□□□□ 0.78
SHOX2-201ENST00000389589 PATE2Q6UY27 113 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms