RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 HTR1DP28221 377 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 MC5RP33032 325 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 CAMPP49913 170 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 B3GALT5-AS1P59052 145 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 STXBP6Q8NFX7 210 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 GRAMD2BQ96HH9 432 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 ZNF48Q96MX3 618 aaPredicted RBP12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 MPC1Q9Y5U8 109 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 MED12LQ86YW9 2145 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 AKAP13Q12802 2813 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 H3BRM9 83 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 COX8AP10176 69 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 SCGB1A1P11684 91 aa12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 CHCHD1Q96BP2 118 aaKnown RBP12.02□□□□□ -0.49
VPS9D1-201ENST00000389386 CELA3AP09093 270 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 C9orf135Q5VTT2 229 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 FAM231DQ6ZW35 169 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 AP1S3Q96PC3 154 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 MCRIP2Q9BUT9 160 aaKnown RBP12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 ABI3Q9P2A4 366 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 VWC2LB2RUY7 222 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 CYC1P08574 325 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 GGNQ86UU5 652 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 BPIFA4PQ86YQ2 179 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 OR10W1Q8NGF6 305 aa12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 SNRNP40Q96DI7 357 aaKnown RBP12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 MAP1BP46821 2468 aaKnown RBP12.01□□□□□ -0.49
VPS9D1-201ENST00000389386 A0A096LPE4 126 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 A0A1B0GXF2 115 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 A0A1W2PPZ6 126 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 SMIM17P0DL12 118 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 OR2K2Q8NGT1 345 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 OR4A16Q8NH70 328 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 OR10D3Q8NH80 312 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 H1FXQ92522 213 aaKnown RBP12□□□□□ -0.49
VPS9D1-201ENST00000389386 HSD17B10Q99714 261 aaKnown RBP12□□□□□ -0.49
VPS9D1-201ENST00000389386 PMCHL2Q9BQD1 86 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 NPFFR1Q9GZQ6 430 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 DUSP13Q9UII6 198 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 H3BUT2 72 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 IGFBP2P18065 325 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 UQCRFS1P47985 274 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 ERVK11-1P61568 191 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 NRN1LQ496H8 165 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 PRR31Q5SQ13 230 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 PRAMEF5Q5TYX0 476 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 PRAMEF6Q5VXH4 476 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 LINC00696Q6ZRV3 163 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 IDI2-AS1Q9NZ38 188 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 SVILO95425 2214 aa12□□□□□ -0.49
VPS9D1-201ENST00000389386 HCFC1P51610 2035 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 FAM90A9PA6NNJ1 464 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 APOA2P02652 100 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 AZU1P20160 251 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 CYB561P49447 251 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 SSX8Q7RTT4 187 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 TMEM251Q8N6I4 163 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 LINC00479Q96M42 142 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 MAP1LC3CQ9BXW4 147 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 PPIAL4EA0A075B759 164 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 PPIAL4CA0A0B4J2A2 164 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 A0A1W2PRE2 83 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 ZNF503-AS2A6NEH8 195 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 HIGD1CA8MV81 97 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 SNAI2O43623 268 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 PPIAL4FP0DN26 164 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 FOXA3P55318 350 aaPredicted RBP11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 PSG3Q16557 428 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 OR4A5Q8NH83 315 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 PLEKHA3Q9HB20 300 aa11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 TET2Q6N021 2002 aaPredicted RBP11.99□□□□□ -0.49
VPS9D1-201ENST00000389386 OR5AL1P0C617 328 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 HIST1H1EP10412 219 aaKnown RBP11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 DUTP33316 252 aaKnown RBP11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 ZNF146Q15072 292 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 Q6ZR03 302 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 ATP5L2Q7Z4Y8 100 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 OR10AG1Q8NH19 301 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 NABP2Q9BQ15 211 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 NAA38Q9BRA0 125 aaKnown RBP11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 JKAMPQ9P055 326 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 TMEM30CPA0ZSE6 113 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 SP1P08047 785 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 CRYBA4P53673 196 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 PLP1P60201 277 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 FOXF2Q12947 444 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 Q8TCH9 128 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 ATP6V0BQ99437 205 aa11.98□□□□□ -0.49
VPS9D1-201ENST00000389386 TRAV3A0A0B4J244 114 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 A0A0G2JLM5 398 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 A6NDN8 102 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 PSPNO60542 156 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 LIPFP07098 398 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 CEACAM3P40198 252 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 ATP1A1-AS1Q5TC04 95 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 LINC01545Q5VT33 79 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 TRAT1Q6PIZ9 186 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 WDR86Q86TI4 376 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 LRRC29Q8WV35 223 aa11.97□□□□□ -0.49
VPS9D1-201ENST00000389386 PLPPR2Q96GM1 343 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms